hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02389/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1102  ( 785 res)   mbh02389

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
LIM       LIM domain                                     20.9    0.00058   1
E-MAP-115 E-MAP-115 family                              -78.6        0.3   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
E-MAP-115   1/1      42   205 ..     1   193 []   -78.6      0.3
LIM         1/1     715   778 ..     1    62 []    20.9  0.00058

Alignments of top-scoring domains:
E-MAP-115: domain 1 of 1, from 42 to 205: score -78.6, E = 0.3
                   *->APgkaensaAlsKptAGTTDaeEAtrLLAEKRRqAReQrEkEEqERr
                       P  ++   A s  +      eEA+ L     Rq  +Q     q R 
   mKIAA1102    42    GPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQL-INNQLRE 87   

                   eqeE.rdrrkREElkrraaEeRtlrrEeEARrrEeeraRekeekKKqEGE
                   e    +d + R    rr a     ++EeE  + E     e          
   mKIAA1102    88 EDDKwQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTS------ 131  

                   EKRKAGEElkRkAEEeLLLKekrEqEeqErAmiqkQKEeAEaraREeAE.
                   E+RK     +    E+    e+rE+E  E       K +   r+ EeAE+
   mKIAA1102   132 ERRKSIKTYREIVQEK----ERRERELHEA-----YKNA---RSQEEAEg 169  

                   ..rvRlEREkhfqqeEQ..ERlERkKRLeEIMKRTRksevsekVKkeDsk
                     ++  ER   f   E   ERlE  K Le       +s  +e        
   mKIAA1102   170 ilQQYIER---FTISEAvlERLEMPKILE-------RSHSTEP------N 203  

                   eG<-*
                   +    
   mKIAA1102   204 VS    205  

LIM: domain 1 of 1, from 715 to 778: score 20.9, E = 0.00058
                   *->CagCgkpIy..drevvmrAlnkvwHpeCFrCavCgkpLtegde...f
                      C+ Cg +  +++++++   ln ++H+ CFrC +C+ +L++  ++++ 
   mKIAA1102   715    CSSCGLTLGkgAAMII-ETLNLYFHIQCFRCGICKGQLGDAVSgtdV 760  

                   yekdgskelYCkkDYyklfg<-*
                    +++g   l C  +Y + ++   
   mKIAA1102   761 RIRNG-L-LNCTDCYMRSRS    778  

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