hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06933/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1100  ( 384 res)   mbg06933

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RING     Ring finger                                     41.9    8.3e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RING       1/1     332   372 ..     1    23 []    41.9  8.3e-08

Alignments of top-scoring domains:
RING: domain 1 of 1, from 332 to 372: score 41.9, E = 8.3e-08
                   *->CpICle.......pvvlpCgH.FCr.Ci.........CPlC<-*
                      C +C+++ + ++ ++vlpC+H+F+ +C++++ + +++CP+C   
   mKIAA1100   332    CVVCFSdfevrqlLRVLPCNHeFHAkCVdkwlkanrtCPIC    372  

//