hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06933/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1100  ( 384 res)   mbg06933

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           43.1    6.3e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1     332   372 ..     1    50 []    43.1  6.3e-09

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 332 to 372: score 43.1, E = 6.3e-09
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C +C+  ++      + +lpC+H      f+ +C+ +wl+  +n+tC
   mKIAA1100   332    CVVCFSDFEVRQL--LRVLPCNHE-----FHAKCVDKWLK--ANRTC 369  

                   plC<-*
                   p+C   
   mKIAA1100   370 PIC    372  

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