hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj15083/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1099  ( 981 res)   mfj15083

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
small_GTP small_GTP: small GTP-binding protein domain    30.8    3.2e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
small_GTP   1/1     193   351 ..     1   186 []    30.8  3.2e-05

Alignments of top-scoring domains:
small_GTP: domain 1 of 1, from 193 to 351: score 30.8, E = 3.2e-05
                   *->lkdikigivGdpnvGkstllnrllgnkgsitesgptdgttrdyvtes
                        + k+givG  ++Gks+l+ r+l  +  + e  p    +r   +  
   mKIAA1099   193    VPELKVGIVGNLASGKSALVHRYLTGT-YVQEESP--EGGRFKKE-- 234  

                   ieedgktitgatfqWgykfnllDtpGlhrqedydalrrlyypevlsslev
                   i +dg           y++ + D +G   ++ +          v+++++v
   mKIAA1099   235 IVVDGQS---------YLLLIRDEGG-PPEAQF-------AMWVDAVIFV 267  

                   ldlvilvldvedglekdtkeiihhadkygvpillvgnkidlkdekpgyfv
                   ++l    ++++ +   ++  + +++ ++++p++lvg++  + +   +  v
   mKIAA1099   268 FSLEDE-ISFQTVY-HYYSRMANYRNTSEIPLVLVGTQDAISS--TNPRV 313  

                   dlkphlaslfaklngephfiplsaetgkgidslfglvea<-*
                     +   ++l + l+ ++ + ++ a  g +++ +f+ v     
   mKIAA1099   314 IDDVRARKLSNDLKRCT-YYETCATYGLNVERVFQDVAQ    351  

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