hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk01986/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1098  ( 193 res)   mpk01986

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RING     Ring finger                                     40.8    1.8e-07   1
BBOX     B-Box-type zinc finger, protein interaction     37.4    1.9e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RING       1/1      32    71 ..     1    23 []    40.8  1.8e-07
BBOX       1/1     107   148 ..     1    51 []    37.4  1.9e-06

Alignments of top-scoring domains:
RING: domain 1 of 1, from 32 to 71: score 40.8, E = 1.8e-07
                   *->CpICle....pvvlpCgH.FCr.Ci...........CPlC<-*
                      C++C+++ +++v+l CgH+FCr+C+++ ++ +++++CP+C   
   mKIAA1098    32    CAVCYDpfrdAVTLRCGHnFCRrCVsgcwevqttpsCPVC    71   

BBOX: domain 1 of 1, from 107 to 148: score 37.4, E = 1.9e-06
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      ++++ C  H+  +p+++fC  ed +llC+ C     H      + Hr
   mKIAA1098   107    RSPRPCRAHR--APLTLFC-LEDKELLCCACQADARH------QEHR 144  

                   vvll<-*
                   v+++   
   mKIAA1098   145 VQPI    148  

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