hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk01986/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1098  ( 193 res)   mpk01986

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-B_box B-box zinc finger                               46.6    5.6e-10   1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           30.5      4e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1      32    71 ..     1    50 []    30.5    4e-05
zf-B_box   1/1     109   148 ..     1    46 []    46.6  5.6e-10

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 32 to 71: score 30.5, E = 4e-05
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgntt.
                      C++C +++ +++     +l CgH      fCr C++ +++   +tt+
   mKIAA1098    32    CAVCYDPFRDAV-----TLRCGHN-----FCRRCVSGCWE--VQTTp 66   

                   .CplC<-*
                   +Cp+C   
   mKIAA1098    67 sCPVC    71   

zf-B_box: domain 1 of 1, from 109 to 148: score 46.6, E = 5.6e-10
                   *->ervCpeHgekaslfCedDqalLCvvCdesgeHsanklargHtvvpl<
                      +r C +H+++++lfC +D +lLC+ C+   +H      + H+v+p+ 
   mKIAA1098   109    PRPCRAHRAPLTLFCLEDKELLCCACQADARH------QEHRVQPI  148  

                   -*
                     
   mKIAA1098     -    -    

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