hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07126/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1097  ( 838 res)   mbg07126

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_UBP  Ubiquitin Carboxyl-terminal Hydrolase-like z    42.6    5.4e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_UBP    1/1      43    95 ..     1    61 []    42.6  5.4e-08

Alignments of top-scoring domains:
ZnF_UBP: domain 1 of 1, from 43 to 95: score 42.6, E = 5.4e-08
                   *->rCsvEvCgtie.nGalWlCLi..CGqvgCGRyqeggdGgGnsHaleH
                       C+  +C+   +n  lW+CL+++C +vgCG++q        +H+  H
   mKIAA1097    43    ACQ--DCKVRGpN--LWACLEnrCSYVGCGESQV-------DHSTIH 78   

                   yeetgHplavklgtqrv<-*
                   + et H l v+l+t+rv   
   mKIAA1097    79 SQETKHYLTVNLTTLRV    95   

//