hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07126/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1097  ( 838 res)   mbg07126

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UCH      Ubiquitin carboxyl-terminal hydrolase          268.4    9.5e-77   1
zf-UBP   Zn-finger in ubiquitin-hydrolases and other     37.5    3.1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-UBP     1/1      44   118 ..     1    82 []    37.5  3.1e-07
UCH        1/1     165   608 ..     1   273 []   268.4  9.5e-77

Alignments of top-scoring domains:
zf-UBP: domain 1 of 1, from 44 to 118: score 37.5, E = 3.1e-07
                   *->CvstCgl.tenlWlCLt..CGqvgCGryqylgdGgngHaleHyretg
                      C   C+++  nlW CL+++C +vgCG+         +H+  H  et 
   mKIAA1097    44    C-QDCKVrGPNLWACLEnrCSYVGCGES------QVDHSTIHSQETK 83   

                   HplavklktqstwcyacdaYvhqeddeedalDgkylvd<-*
                   H l v+l+t+++wcyac+  v +  ++   + +  l     
   mKIAA1097    84 HYLTVNLTTLRVWCYACSKEVFLDRKLG--TPPS-LPH    118  

UCH: domain 1 of 1, from 165 to 608: score 268.4, E = 9.5e-77
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyeseinesnpl
                       g+tGL+N+GNTCYmN++LQ+L+++ppl++++l +    +       
   mKIAA1097   165    RGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGGLART------ 205  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcaladLfnalqsg.yksvvpsplkflqfkttlgkineefsgym
                   ++k  +++++ +L+ +l++++++  v++ ++f    + ++  n+ f gy 
   mKIAA1097   206 DKKPAICKSYLKLMTELWHKsRPGSVVPANLF----QGIKTVNPTFRGYS 251  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   QqDAhEFllfLLdgLhedlnrvnkkpytepesdkrpdkaaeawknhslrn
                   QqDA+EFl+ L+d Lhe+l+                              
   mKIAA1097   252 QQDAQEFLRCLMDLLHEELKE----------------------------- 272  

                RF xxxxxxxxxxxxxx                                    
                   eslitdlFqGqles....................................
                        ++ + + e ++ +++++ ++++++++ + +++++++++++ ++++
   mKIAA1097   273 -----QVMEMEEEPqtltseetveeeksqsdvdfqscescsssekaenes 317  

                RF                                                   
                   ..................................................
                   ++++ ++++++++   +++++ +  ++ ++++ +++ ++ + + + ++++
   mKIAA1097   318 gskgfpedsnettmliqdeddlemakdwqkekvcnkinkanadveldkdr 367  

                RF                                                   
                   ..................................................
                   ++ +++ + +++++ + + +++ +++ ++ + ++  +++  +++++ +++
   mKIAA1097   368 dtvcetvdlnsqetvkvqihgrasesitdvhlndlatsqilpsnesvspr 417  

                RF                                                   
                   ..................................................
                    + +++++++  ++ ++++++ ++++ ++++++++ ++  ++  +++  +
   mKIAA1097   418 lsasppkpgslwpglspphkkaqstsakrkkqhkkyrsvisdifdgtvis 467  

                RF                                 xxxxxxxxxxxxxxxxxx
                   ................................rlkisrLPpiLiihLKRF
                   + ++ ++++ + +++  +++++++ +++ + +++   ++P+iL+ihLKRF
   mKIAA1097   468 svqcltcdrvsmgdnmyscekckklrngvkfcKV--QKFPEILCIHLKRF 515  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx    xxxxxxxxxxxxxxx
                   kydgetgmnkKindkVefPleLdlssyctae....pplkYeLyaVvvHsG
                     +    + +Ki++ V+fPle ++   ++a++++ +  +Y+L +V++H+G
   mKIAA1097   516 RHELM--FSTKISTHVSFPLEGLDLQPFLAKdspaQIVTYDLLSVICHHG 563  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 
                   sslsgGHYiayikkkkknnkWykfDDekVsevseeevlersssAYiLFY<
                    ++s+GHYiay++ ++ nn Wy fDD++V+evse++v   + +AY+LFY 
   mKIAA1097   564 -TASSGHYIAYCR-NNLNNLWYEFDDQSVTEVSESTV--QNAEAYVLFY  608  

                RF   
                   -*
                     
   mKIAA1097     -    -    

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