hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00585/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1096  ( 2062 res)   mbg00585

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BAT2_N   BAT2 N-terminus                                395.2   6.6e-115   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BAT2_N     1/1       5   169 ..     1   197 []   395.2 6.6e-115

Alignments of top-scoring domains:
BAT2_N: domain 1 of 1, from 5 to 169: score 395.2, E = 6.6e-115
                   *->MSdrSGQntkakDGksKYstLSLfntYkGksLepGqrgnvapRhGLQ
                      MS++SGQ+tkakDGk KY+tLSLfntYkGksLe+ q+++va+RhGLQ
   mKIAA1096     5    MSEKSGQSTKAKDGK-KYATLSLFNTYKGKSLET-QKTTVAARHGLQ 49   

                   SLGKvAniaRRMPPPAnLPSLkAENkGnDPnvpiVPkDGTGWAskqeqnd
                   SLGKv+ i+RRMPPPAnLPSLkAENkGnDPnv+iVPkDGTGWAskqeq++
   mKIAA1096    50 SLGKVG-ISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHE 98   

                   pksspatptqpppaqPkPgvqqpasnLqpprqsiaqENTneVpsgpKSWa
                   ++++    ++++paqPkPgv++       p+         eV+++pKSWa
   mKIAA1096    99 EEKA----PEVSPAQPKPGVAA-------PP---------EVAPAPKSWA 128  

                   qasnkegghgdGlqansrllrfsaeEFPsLqAPAgDqDKankekeitdsS
                     snk+gg+gdG+q+ns++    ++EFPsLqA AgDq+K  keke++d++
   mKIAA1096   129 --SNKQGGQGDGIQVNSQF----QQEFPSLQA-AGDQEK--KEKEANDEN 169  

                   <-*
                      
   mKIAA1096     -     -    

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