hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj25249/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1095  ( 1052 res)   mfj25249

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.     151.0    1.3e-40   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/2     246   328 ..     1    80 []    85.1  8.4e-21
PDZ        2/2     418   493 ..     1    80 []    68.3  9.6e-16

Alignments of top-scoring domains:
PDZ: domain 1 of 2, from 246 to 328: score 85.1, E = 8.4e-21
                   *->gglGfsivg..............gifvssvvpGspAakaGrkslglL
                      g+lGf+i g+++  +++++++++gifvs++v+ +pAak G+     L
   mKIAA1095   246    GSLGFNIIGgrpcvdnqdgssseGIFVSKIVDSGPAAKEGG-----L 287  

                   kvGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   ++ D+I+eVNG ++++ +th++av++ k a++     ++++ vlR+    
   mKIAA1095   288 QIHDRIIEVNG-KDLSRATHDQAVEAFKTAKE-----PIVVQVLRRT    328  

PDZ: domain 2 of 2, from 418 to 493: score 68.3, E = 9.6e-16
                   *->gglGfsivg........gifvssvvpGspAakaGrkslglLkvGDvI
                        lG+++  +++++++ gi++s++ p+s Aak+Gr     +++GD+I
   mKIAA1095   418    DKLGLTVCYrtddeddiGIYISEIDPNSIAAKDGR-----IREGDRI 459  

                   leVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +++NG + v+    eeav+ll +  +    +  +L++ R++   
   mKIAA1095   460 IQING-IEVQ--NREEAVALLTSEEN----KNFSLLIARPE    493  

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