hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj25249/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1095  ( 1052 res)   mfj25249

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      PDZ domain (Also known as DHR or GLGF)         128.9    9.1e-35   2
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           23.5     0.0038   1
zf-TRAF  TRAF-type zinc finger                           16.1      0.014   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1       7    45 ..     1    50 []    23.5   0.0038
zf-TRAF    1/1      90   145 ..     1    60 []    16.1    0.014
PDZ        1/2     238   325 ..     1    82 []    73.6  4.1e-18
PDZ        2/2     408   490 ..     1    82 []    57.5  2.8e-13

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 7 to 45: score 23.5, E = 0.0038
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++C+  l++p      ++pCgH      fC  C++ w+    + +C
   mKIAA1095     7    CALCHKVLEDPL-----TTPCGHV-----FCAGCVLPWVV--QEGSC 41   

                   pl.C<-*
                   p +C   
   mKIAA1095    42 PArC    45   

zf-TRAF: domain 1 of 1, from 90 to 145: score 16.1, E = 0.014
                   *->HekntCPfvpvpCpnekCgvkkilRedlpdHlsedCpkrev.pCpFk
                      H++  C f+p  C + +Cg + +lR+d+++H +++C  r+v+ C   
   mKIAA1095    90    HLE-RCDFAPARCRHAGCG-QLLLRRDVEAHMRDACDARPVgRCQE- 133  

                   eyGCkvevkrenlQ<-*
                     GC    +  ++    
   mKIAA1095   134 --GCGLPLTHGEQR    145  

PDZ: domain 1 of 2, from 238 to 325: score 73.6, E = 4.1e-18
                   *->evtlekevkrgglGfsikggsdk..........givvsevlpGsgaA
                      +++l++    g+lGf+i gg  + +++++++++gi+vs+++   +aA
   mKIAA1095   238    TLVLHR--DSGSLGFNIIGGRPCvdnqdgssseGIFVSKIVDSGPAA 282  

                   eagGrLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   + gG L+++D+I++vNG+d++  +h++av+a k +++ ++ + +l   
   mKIAA1095   283 KEGG-LQIHDRIIEVNGKDLSRATHDQAVEAFKTAKE-PIVVQVL    325  

PDZ: domain 2 of 2, from 408 to 490: score 57.5, E = 2.8e-13
                   *->evtlekevkrgglGfsikggsdk....givvsevlpGsgaAeagGrL
                      ev l + +++ +lG+++   +d++++ gi++se+ p+ + A+++Gr+
   mKIAA1095   408    EVGLYRMNSQDKLGLTVCYRTDDeddiGIYISEIDPN-SIAAKDGRI 453  

                   keGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   +eGD+I+++NG  v n  +e ++l++ + ++   +L+i+   
   mKIAA1095   454 REGDRIIQINGIEVQNR-EEAVALLTSEENK-NFSLLIA    490  

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