hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00524/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1090  ( 857 res)   mph00524

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET domain                                     199.1    6.7e-56   1
PHD      PHD-finger                                     110.0    4.7e-29   3
PWWP     PWWP domain                                     83.5    4.4e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/3     161   205 ..     1    51 []    47.8  2.5e-10
PHD        2/3     325   367 ..     1    51 []    59.8  5.9e-14
PWWP       1/1     369   445 ..     1    87 []    83.5  4.4e-21
SET        1/1     549   678 ..     1   261 []   199.1  6.7e-56
PHD        3/3     733   780 ..     1    51 []    18.8   0.0047

Alignments of top-scoring domains:
PHD: domain 1 of 3, from 161 to 205: score 47.8, E = 2.5e-10
                   *->yCsvCgkpdddaggdllqCD.gCdrwfHlaClgppleeppegkWlCp
                       C++C k      g ll+C++ C+ +fHlaClg++ +  peg ++C 
   mKIAA1090   161    VCQLCEK-----TGSLLLCEgPCCGAFHLACLGLSRR--PEGRFTCT 200  

                   eCtpk<-*
                   eC  +   
   mKIAA1090   201 ECASG    205  

PHD: domain 2 of 3, from 325 to 367: score 59.8, E = 5.9e-14
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
                      +C+vC+k     gg ll+C+ C+ +fH++Cl+++++   +g W+C++
   mKIAA1090   325    WCFVCSK-----GGSLLCCEACPAAFHPDCLNIEMP---DGSWFCND 363  

                   Ctpk<-*
                   C+++   
   mKIAA1090   364 CRAG    367  

PWWP: domain 1 of 1, from 369 to 445: score 83.5, E = 4.4e-21
                   *->dfkpgDLVwAKmkGfpwWPAriisqketptsvrkklkrimTqeaksn
                      ++++ D++w+K++ ++wWPA+++++k +p ++ k       +++  +
   mKIAA1090   369    KLHFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQK-------MKHEIG 408  

                   lykVlFFgdhktrawvskkklkPlldqdidkfkkdekrKg<-*
                   +++V+FFg++++ +w+++++++P+  +++d+ ++    +g   
   mKIAA1090   409 EFPVFFFGSKDY-YWTHQARVFPY--MEGDRGSRYQGVRG    445  

SET: domain 1 of 1, from 549 to 678: score 199.1, E = 6.7e-56
                   *->vqkgrwarlegfktegkGwGlratedIpkGefiiEYpGelitseeae
                      ++k++++  +++kt+gkGwGl+a++dI+kGef+ EY+Geli+ ee+ 
   mKIAA1090   549    FTKRQYPETKIIKTDGKGWGLVAKRDIRKGEFVNEYVGELIDEEECM 595  

                   kreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPtys
                    r       ky++ + ++++  Y++ +d+                     
   mKIAA1090   596 ARI------KYAHENDITHF--YMLTIDK--------------------- 616  

                   PlfWseeeleLkGTqllevdkeeleeydllaeeievflqhklFpdveeef
                                                                     
   mKIAA1090     - -------------------------------------------------- -    

                   sfedflWaasivsSRafslvegvnreeensegslelviDAtrkGNiaRFi
                                                     + +iDA+ kGN++RF+
   mKIAA1090   617 ----------------------------------DRIIDAGPKGNYSRFM 632  

                   NHSCePNcevqvvfvdgedlgdsdvtDeaglepgdprivlfAlrdIpaGe
                   NHSC+PNce+ +++v+                 gd r++lfA +dIpaG+
   mKIAA1090   633 NHSCQPNCETLKWTVN-----------------GDTRVGLFAVCDIPAGT 665  

                   ELtydYgydksnge<-*
                   ELt++Y+  ++ g+   
   mKIAA1090   666 ELTFNYN-LDCLGN    678  

PHD: domain 3 of 3, from 733 to 780: score 18.8, E = 0.0047
                   *->yCsvCgkpdddaggdllqCD..gCdrwfHlaClgppleeppegkWlC
                       C+ Cg+     gg+l++CD++ C +++Hl+Clg+  +  p gkW C
   mKIAA1090   733    ECFRCGD-----GGQLVLCDrkFCTKAYHLSCLGLGKR--PFGKWEC 772  

                   p..eCtpk<-*
                   p ++C+++   
   mKIAA1090   773 PwhHCDVC    780  

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