hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj06035/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1088  ( 1211 res)   mfj06035

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc2   No definition                                  230.3    1.7e-64   1
HELICc2  No definition                                  223.2    2.3e-62   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc2     1/1      11   290 ..     1   447 []   230.3  1.7e-64
HELICc2    1/1     565   719 ..     1   160 []   223.2  2.3e-62

Alignments of top-scoring domains:
DEXDc2: domain 1 of 1, from 11 to 290: score 230.3, E = 1.7e-64
                   *->lefyFPYepIYpiQyefMeelkrvLdrGkigILESPTGTGKTlSLLc
                      +++ FP++p Yp+Q e+M  + ++L  + +gILESPTGTGKTl LLc
   mKIAA1088    11    VTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLC 56   

                   ltltwlrsfpekirtdlstrLeevetkikekkdeSeklSdeledwvkera
                   +tl+w+++  + +                                     
   mKIAA1088    57 STLAWQQHLRDAV------------------------------------- 69   

                   qkikliylsrtvsrkdeiEkrleELrklmqkkkrqmrdrdkeeeReksre
                     + l + +r ++ +  + ++l    ++++                    
   mKIAA1088    70 --SSLKIAERVQGEL-FASRTLSSWGSAAA-------------------- 96   

                   nLrkepkaerdldlekeee.apseeYesdeesekesksdesedvdeeeek
                                      +  s e ++d                    +
   mKIAA1088    97 ------------------AsGDSIECYTD--------------------I 108  

                   dkdyfcsryhSqlaqllhelgkepekekvlglsltvSRkntLCinpeVrt
                   +k+ + sr+hSql q+++el+ + +++kv    l+ SR++ LCi+peV++
   mKIAA1088   109 PKIIYASRTHSQLTQVIRELRNTAYRPKV--CVLG-SREQ-LCIHPEVKK 154  

                   lkknglvvfslkvkvlsLASkdelCrsltaskarkkeKVaknekcakkde
                    ++n+ +                lCr+ +as+ +                
   mKIAA1088   155 QESNHMQI--------------SLCRKKVASRSC---------------- 174  

                   nekaerCeFyentefldkrnDtLALRdlllaEvydiEdLvelGkelglCP
                           Fy+n+e   ++         l + ++diEdLv+ G ++++CP
   mKIAA1088   175 -------HFYNNVEAKFLE-------QDLATPILDIEDLVKNGSKQKMCP 210  

                   YfasRkaiefAnvVvlPYqYLLdpkiRqalsieLkleYkdsIVIfDEAHN
                   Y++sR + ++A ++  PY+YLLd+k R+a si+Lk    + +VIfDEAHN
   mKIAA1088   211 YYLSRNMKQQADIIFMPYNYLLDAKSRKAHSIDLK----GTVVIFDEAHN 256  

                   LdnvcisalSselsrrsLerAhknikkyeeriekkslteelrlirendak
                   ++ +c++++S +l+ r+++    ++  +++ +e+                
   mKIAA1088   257 VEKICEESASFDLTPRDVAS---GLEIINQVLEE--------------QA 289  

                   r<-*
                   r   
   mKIAA1088   290 R    290  

HELICc2: domain 1 of 1, from 565 to 719: score 223.2, E = 2.3e-62
                   *->YeyleqvveywkengilenilkkleakkpvfvEgkdsge.selleky
                      Y ++e+ +e w+ +g+++    k ea kp+fvE++++g+ se++++y
   mKIAA1088   565    YPVMEKSLEFWQVQGLAR----KVEALKPLFVEPRNKGSfSEVIDAY 607  

                   saaiaapgrrnGrGalLlaVarGKlSEGiDFpddlgRNLlaViivGiPFp
                   ++ +a p   +++Ga +laV+rGK SEG+DF+d +gR   +Vi+ G+P+p
   mKIAA1088   608 YQQVASP---ASNGATFLAVCRGKASEGLDFSDMNGR---GVIVTGLPYP 651  

                   npddpilrarleyldekggrk....qirafdevyendamralnQaiGRai
                   + +dp+++ ++++lde+ gr++ ++q  +++e+y+++a+ra+nQaiGR+i
   mKIAA1088   652 PRMDPRVVLKMQFLDEMRGRSgvggQCLSGQEWYQQQASRAVNQAIGRVI 701  

                   RhknDyGvvvllDkRyar<-*
                   Rh+ DyG+++l+D+R+a    
   mKIAA1088   702 RHRHDYGAIFLCDHRFAY    719  

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