hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj06035/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1088 ( 1211 res) mfj06035 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DEAD_2 DEAD_2 285.3 7.9e-82 1 ResIII Type III restriction enzyme, res subunit -31.6 0.13 1 DEAD DEAD/DEAH box helicase -40.2 0.46 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ResIII 1/1 17 273 .. 1 244 [] -31.6 0.13 DEAD 1/1 19 274 .. 1 266 [] -40.2 0.46 DEAD_2 1/1 113 274 .. 1 210 [] 285.3 7.9e-82 Alignments of top-scoring domains: ResIII: domain 1 of 1, from 17 to 273: score -31.6, E = 0.13 *->iklRpyQeeAierllesiekgelrlatglkdkdkkkrglivmATGsG ++++p+Q+e +++le ++k +g++ ++TG+G mKIAA1088 17 FQPYPCQQEYMTKVLECLQKK--------------VNGILESPTGTG 49 KTltaa..kiliarllkkqqklkhgriddskvLFlVprkdLleQaleeF. KTl+ + + l+++++ V ++ ++e+ + e+ mKIAA1088 50 KTLCLLcsT-LAWQQHLRDA---------------VSSLKIAERVQGELf 83 .................................................. +++ ++ ++ ++++ + ++ ++ ++++++ ++ ++ +++ mKIAA1088 84 asrtlsswgsaaaasgdsiecytdipkiiyasrthsqltqvirelrntay 133 .........................................tkfeskkkk +++ +++++ +++ +++++++ + + +++ +++ ++++ + k mKIAA1088 134 rpkvcvlgsreqlcihpevkkqesnhmqislcrkkvasrscHFYNNVEAK 183 ef.knpg.....vdkklkvltdnqkdsalegkskkndieiifttiQkLsk + ++ ++++ ++++ k++ +++ + + + + k+ ++iif+ + L mKIAA1088 184 FLeQDLAtpildIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 233 alklgkendeeekskstesvvglrlavesleflldefdliIiDEaHrssa a k +k +++ k+ ++I+DEaH mKIAA1088 234 A-KSRKAHSIDLKGT-----------------------VVIFDEAH---- 255 ktksakededatklevyrkilekwe.l.e.lnkkyfkpaflLGlTATPer + +ki e e+++++l TP + mKIAA1088 256 -N--------------VEKICE--EsAsFdL---------------TPRD 273 <-* mKIAA1088 - - DEAD: domain 1 of 1, from 19 to 274: score -40.2, E = 0.46 RF xxxxxxxxxxxxxxxxxxxx xxxx xxxxxxxxxxxxxxxxxxxx *->ptpiQaeaipaileneGfal.redv..lssggmdrlvlqApTGSGKT p+p Q+e + +le +l++ v+++ + +pTG+GKT mKIAA1088 19 PYPCQQEYMTKVLE----CLqK-KVngI--------L-ESPTGTGKT 51 RF xxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxx xx x lafllPily.gqrllkgpksarggksqgggkner.gf.k........... l+ l l +q+l r++++ + ++ +++ mKIAA1088 52 LCLLCSTLAwQQHL-------------------RdAVsSlkiaervqgel 82 RF .................................................. +++ ++ ++ ++++ + ++ ++ ++++++ ++ ++ +++ mKIAA1088 83 fasrtlsswgsaaaasgdsiecytdipkiiyasrthsqltqvirelrnta 132 RF .................................................. +++ +++++ +++ +++++++ + + +++ +++ + ++ + mKIAA1088 133 yrpkvcvlgsreqlcihpevkkqesnhmqislcrkkvasrschfynnvea 182 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ...........idspqalvlaPTreLaeQiyeelkkllkilalsplgvne + +++ ++ d +e+ +++ +k mKIAA1088 183 kfleqdlatpiLD-------------IEDLVKNGSK-------------- 205 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxx llrrigtglrvavlslyGGsslkdqldkl.rgkreskggpdIvvgTPgrL + ++ + + ++ ++dI+ + + L mKIAA1088 206 ---------QKMCPYYLS--------RNMkQ-------QADIIFMPYNYL 231 RF xxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxx ldllrngrinikievssertgkl.klknlkhlkllVlDEahrlldmghgF ld r+ + +lk +++DEah + mKIAA1088 232 LDAK-------------SRKAHSiDLKG----TVVIFDEAHNVEK----- 259 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx gedleeilrrlprneplraqllgtilHqkpniQtllfSATlpprevedl< ++ ++ SA + + +d+ mKIAA1088 260 ----------------IC---------EE--------SASF-DLTPRDV 274 RF -* mKIAA1088 - - DEAD_2: domain 1 of 1, from 113 to 274: score 285.3, E = 7.9e-82 *->YcSRTHsQleQvikELkklpsyrkkklGyeepkvrgvivLgSRknlC Y+SRTHsQl+Qvi+EL+++ +yr+ v+vLgSR++lC mKIAA1088 113 YASRTHSQLTQVIRELRNT-AYRP-----------KVCVLGSREQLC 147 inpeVkklkkgeaiNekCkelvksgkrekeeektEkPwktKKriaenves i+peVkk+++++ C+++v+s+ s mKIAA1088 148 IHPEVKKQESNHMQISLCRKKVASR------------------------S 173 CpfynnlkkiedlkkllvkdllgnevydiEdLveyGkklglCPYYlsRel C+fynn ++k l +++l ++++diEdLv+ G k ++CPYYlsR + mKIAA1088 174 CHFYNNV----EAKFL--EQDLATPILDIEDLVKNGSKQKMCPYYLSRNM 217 ipdAdiIilPYnYLLdpkiReslkkelGinlknsiVIfDEAHNIedvcie ++AdiI++PYnYLLd+k R++++ i+lk+++VIfDEAHN+e++c+e mKIAA1088 218 KQQADIIFMPYNYLLDAKSRKAHS----IDLKGTVVIFDEAHNVEKICEE 263 EeslSfeisersL<-* s+Sf++++r++ mKIAA1088 264 --SASFDLTPRDV 274 //