hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB Sequence file: /cdna4/rodent/full/goal/mbg/mbg10728/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1087 ( 723 res) mbg10728 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- caca caca: sodium/calcium exchanger 1 1624.4 0 1 TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger r -219.4 0.87 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR00367 1/1 312 708 .. 1 523 [] -219.4 0.87 caca 1/1 1 723 [] 1 1067 [] 1624.4 0 Alignments of top-scoring domains: TIGR00367: domain 1 of 1, from 312 to 708: score -219.4, E = 0.87 *->Lillliglli....lGLiLliygadlfVkslvrIarkLGiSpliiGv L l+++ +++++++G++ d+++ ++ ++ v mKIAA1087 312 L--LATVTILdddhAGIFSF---QDRLLHVSECMGT--------VDV 345 Tvv....AiGTS.lPElft..SLiAslagqpdigvGnviGSNIfNIlLiL vv++++A GT +lP +++ + + + d mKIAA1087 346 RVVrssgARGTVrLPYRTVdgTARGGGVHYEDAC---------------- 379 GlsAiisrpiivdkdlPLrrdilflLlvsilLlffglDGqSYSFFvmwis ++++ d+ + + + +++ D ++ mKIAA1087 380 -------GELEFGDDE-TMKTLQVKIVD---------DEE--------YE 404 rldgvvllilyvvYLlflvKeerwvekesnRNKVVKVTVSEAQAKASTAG + d +++ ++ +L++ + + ++n K + EAQ A mKIAA1087 405 KKDNFFIELGQPQWLKRGISALL--LNQGNGDKKITAEQEEAQRIA---- 448 DKEEPTLPNKPRLQRGGSSASLHNSLmRNSiFQLmiHTLDPLAEELGSYG + P L RL mKIAA1087 449 EMGKPVLGENNRL------------------------------------- 461 KLKYYdtyteEGRFREKASiLHKiAKKKCqldenerqvGAANHVDYAAEK + +eE + ++ N VD K mKIAA1087 462 -----EVIIEE-------------------SYDFK------NTVDKLIKK 481 iELPNSTSTEVEmTPSSEASEPVQNGNLSHS.....iEAADAPQATETAE L T HS +++ iEA E E mKIAA1087 482 TNLALVIGT--------------------HSwreqfIEAVTVSAGDE--E 509 EDDDQPLSLSWPskTekqiffklv.lliigPLWiTLPDVRKPASKKFFPi ED+D P Ps + + f+ v + +++ P mKIAA1087 510 EDEDGPREERLPSCFDYVMHFLTVfWKVLF--------ACVPPTEYCNGW 551 TFFGSliglvVg..srLLVdsAvkiAeNilgISEkiiGLtllAiGTSlPE FG + +lv+g + L d A + + g + + +A GTS+P+ mKIAA1087 552 ACFG-VCILVIGvlTALIGDLASHFGC-TVGLKDSVNAVVFVALGTSIPD 599 LvvSvaaarkglg.DiAvGnviGSNIFNIlvgLgvpaLfvpi.....iip S +aa + D ++Gnv GSN N gLgv++ + + ++ p mKIAA1087 600 TFASKVAALQDQCaDASIGNVTGSNAVNVFLGLGVAWSVAAVywavqGRP 649 veplalslDap.....VmviVtLvlmLlfktlsmklg......RwRmNKi +e a +l ++ + +V ++V ++++L ++ +++g++ +++R+ K+ mKIAA1087 650 FEVRAGTLAFSvtlftVFAFVCIAVLLYRRR--PQIGgelggpRG--PKL 695 .eGvlllalYiaY<-* l+l+l ++Y mKIAA1087 696 aTTALFLGLWFLY 708 caca: domain 1 of 1, from 1 to 723: score 1624.4, E = 0 *->llkliltPllsvgfhlllavflLflevdeaeaaylneasssdsntge mKIAA1087 - ----------------------------------------------- - ctGsylsrrLrqvshGeeGdeGaPsqmddeLeqmtkvhGeaPdaeeLreC mKIAA1087 - -------------------------------------------------- - keGviLPiWePqnpSvGDKlARatVYFValvYmFLGVSIIADRFMASIEV mKIAA1087 - -------------------------------------------------- - ITSkErevvvKkPngettvvtVRIWNETVSNLTLMALGSSAPEILLSVIE mKIAA1087 - -------------------------------------------------- - VcghnFeAGDLGPsTIVGSAAFNLFiIIAiCVyVIPaGEvRkIKHLrVFF F mKIAA1087 1 -------------------------------------------------F 1 VTAtWSVFAYvWLYlILAVfSPGVVeVWEGlLTllFFPltVvtAyiADrR VTA+WS+FAYvWLYlILAVfSPGVV+VWE+lLTl+FFP++Vv+A++AD+R mKIAA1087 2 VTASWSIFAYVWLYLILAVFSPGVVQVWEALLTLIFFPVCVVFAWMADKR 51 LLfYKYlyKrYRagkqrGiiIatEgdepkmdaeieldgkmvgshvgnfLD LLfYKY+yKrYR+++++GiiI++Egd+pk+ ieldg++vg++v+++L+ mKIAA1087 52 LLFYKYVYKRYRTDPRSGIIIGAEGDPPKS---IELDGTFVGTEVPGELG 98 galvg.levkefdQddeEaRrEyIeiLkELrqKhPdkdleqLeemAeyev ++++g++e++e+d ++RrE+I+iLk+L+qKhPdkdleqL ++A+y++ mKIAA1087 99 ALGTGpAEARELD----ASRREVIQILKDLKQKHPDKDLEQLMGIAKYYA 144 lsrqqKSRAFYRIQATRkmtGaGNIlKKhaadaarkalsmkaqevatdde l++qqKSRAFYRIQATR+mtGaGN+l++haadaar+++ + ++++d+ mKIAA1087 145 LLHQQKSRAFYRIQATRLMTGAGNVLRRHAADAARRPG----ATDGAPDD 190 eeDeaskiFFePghYtvLENcGsflltVvRrGGDltkTvyVDYkTEDGtA e+D+as+iFFeP++Y++LENcGs+ll+V+++GG++++T+yVDY+TEDG+A mKIAA1087 191 EDDGASRIFFEPSLYHCLENCGSVLLSVACQGGEGNSTFYVDYRTEDGSA 240 nAGSDYvyteGTLvFkPgetqkefrIgiIDDDiFEEDEhFyvRLsNlrVg +AGSDY+y+eGTLvFkPgetqk +rIgiIDDDiFEEDEhF+vRL+NlrVg mKIAA1087 241 KAGSDYEYSEGTLVFKPGETQKDLRIGIIDDDIFEEDEHFFVRLLNLRVG 290 sEqdedGileantasagLPvaqLasPllATVmILDDDHAGIFtFeedvfh d++G++e++++++ P+++L++PllATV+ILDDDHAGIF+F+++++h mKIAA1087 291 ---DAQGMFEPDGGGR--PKGRLVAPLLATVTILDDDHAGIFSFQDRLLH 335 VsESiGelevkvlRtSGARGtVivPyrTveGTAtggGkDyEdaeGElvFe VsE++G+++v+v+R+SGARGtV++PyrTv+GTA+ggG++yEda+GEl+F+ mKIAA1087 336 VSECMGTVDVRVVRSSGARGTVRLPYRTVDGTARGGGVHYEDACGELEFG 385 ndEteKtirvkIvDdEeYEKnetFfIeLgePrlvkkgislsriqerfqrr +dEt+Kt++vkIvDdEeYEK+++FfIeLg+P+++k+gis mKIAA1087 386 DDETMKTLQVKIVDDEEYEKKDNFFIELGQPQWLKRGIS----------- 424 merkrGssvaseskDsnteaALllnekstravtvdlqpssdprRssqtns ALlln+ + mKIAA1087 425 --------------------ALLLNQ------G----------------- 431 PhLtsrfrnrlgSwiagmkgeydddrkltseeeeakrIAEmGKPrlGEnt +d+k t+e eea+rIAEmGKP+lGEn mKIAA1087 432 ----------------------NGDKKITAEQEEAQRIAEMGKPVLGENN 459 kleViIeESyEFKstVDKLiKKaNlalVvGThSWREQFiEAiTVsAgddD +leViIeESy+FK+tVDKLiKK+NlalV+GThSWREQFiEA+TVsAg D mKIAA1087 460 RLEVIIEESYDFKNTVDKLIKKTNLALVIGTHSWREQFIEAVTVSAG--D 507 ddddEdGeDGeekEEklPSCfDYVMHFLTvFWKVLFAfVPPTdYcgGWAc +++dEdG +EE+lPSCfDYVMHFLTvFWKVLFA+VPPT+Yc+GWAc mKIAA1087 508 EEEDEDG----PREERLPSCFDYVMHFLTVFWKVLFACVPPTEYCNGWAC 553 FvVSIlvIGvLTAiIGDLAShFGCtiGLKDSVTAVvFVALGTSVPDTFAS F+V+IlvIGvLTA+IGDLAShFGCt+GLKDSV+AVvFVALGTS+PDTFAS mKIAA1087 554 FGVCILVIGVLTALIGDLASHFGCTVGLKDSVNAVVFVALGTSIPDTFAS 603 KVAAlqDkyADasIGNVTGSNAVNVFLGIGiAWSiAAIYHaaqGtkFkVd KVAAlqD++ADasIGNVTGSNAVNVFLG+G+AWS+AA+Y+a+qG++F+V+ mKIAA1087 604 KVAALQDQCADASIGNVTGSNAVNVFLGLGVAWSVAAVYWAVQGRPFEVR 653 PGTLAFSVtLFcvfAficIivLlyRRWrkkiGGELGGPrgcKlltsaifv +GTLAFSVtLF+vfAf+cI+vLlyRR r++iGGELGGPrg+Kl+t+a+f+ mKIAA1087 654 AGTLAFSVTLFTVFAFVCIAVLLYRR-RPQIGGELGGPRGPKLATTALFL 702 sLWllYvlfasLeAYChIkGF<-* +LW+lY+lf+sLeAYChI+GF mKIAA1087 703 GLWFLYILFSSLEAYCHIRGF 723 //