hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09268/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1086  ( 454 res)   mbg09268

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_U1   U1-like zinc finger                             29.1    0.00059   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_U1     1/1      66   100 ..     1    37 []    29.1  0.00059

Alignments of top-scoring domains:
ZnF_U1: domain 1 of 1, from 66 to 100: score 29.1, E = 0.00059
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      + +f CklC+++f+ d+++  ++Hl G++H+ +++k    
   mKIAA1086    66    VIRFRCKLCECSFN-DRNAR-DMHLTGRRHRLQYRKK    100  

//