hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09268/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1086  ( 454 res)   mbg09268

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DZF      DZF                                            152.2    8.7e-42   1
zf-U1    U1 zinc finger                                   5.6       0.18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-U1      1/1      66   101 ..     1    38 []     5.6     0.18
DZF        1/1     260   454 .]     1   262 []   152.2  8.7e-42

Alignments of top-scoring domains:
zf-U1: domain 1 of 1, from 66 to 101: score 5.6, E = 0.18
                   *->mPkYYCdYCdcyLthDspsVRksHngGrkHkenvkdYy<-*
                        ++ C+ C c   +D+ ++R +H  Gr+H    ++     
   mKIAA1086    66    VIRFRCKLCECSF-NDR-NARDMHLTGRRHRLQYRKKV    101  

DZF: domain 1 of 1, from 260 to 454: score 152.2, E = 8.7e-42
                   *->rVGsfaKGtllkGdncadvVvllkelPTtelvealarkveeqLksLt
                      rVG++aKG+ l Gd  +++ +l++ +PT +l+ ++  +++  L   +
   mKIAA1086   260    RVGILAKGLVLRGDHSVQLTLLCSKKPTHSLLQRIKQELPRELS--I 304  

                   ieedhkYevlespvealivvknekepqmelgilITSpvvrKvrllivtlP
                   ++ed kYev     +a iv+    ep  +++++ TSp+ r ++ +    +
   mKIAA1086   305 VAED-KYEVSSDH-DANIVISACVEPGVKVTVSATSPLMR-EDPSVK-QG 350  

                   eelrkletedhLDrklclsaLAsiRHtkWFqarAhgLkPAFiqscqvlIR
                   +  +  ++ed+LDr+ cl  LA++RH+kWFq r+                
   mKIAA1086   351 QQDALSDPEDVLDRERCLETLAALRHAKWFQVRS---------------- 384  

                   iLrDLrrRypefspLsdWkleLLaekiImNnpsrqaLglgeAFRRVfEaL
                                     ++eLL+ek ++  +++++L +g+A RRV+E  
   mKIAA1086   385 ------------------AMELLVEKVLS--SAPRPLSPGDAMRRVLEYV 414  

                   ASGillpgsagltDPcEkehtrvltaLtleQrdditmsAQtlvRviAfgn
                   A G ll +++gl DPcEk++ ++l  +t +Qr+d+t+sAQ          
   mKIAA1086   415 ATGALLTDGPGLQDPCEKGPQDALEPMTPQQREDLTASAQ---------- 454  

                   DqykkILGidglpsv<-*
                                     
   mKIAA1086     - ---------------    -    

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