hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00327/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1084  ( 1013 res)   mpf00327

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    141.5      9e-38   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/9     194   216 ..     1    23 []    23.3    0.034
ZnF_C2H2   2/9     224   247 ..     1    23 []    19.3     0.56
ZnF_C2H2   3/9     309   331 ..     1    23 []    12.3       13
ZnF_C2H2   4/9     702   724 ..     1    23 []    25.7   0.0063
ZnF_C2H2   5/9     730   752 ..     1    23 []    23.6    0.028
ZnF_C2H2   6/9     758   781 ..     1    23 []    21.4     0.12
ZnF_C2H2   7/9     818   840 ..     1    23 []    25.0    0.011
ZnF_C2H2   8/9     846   868 ..     1    23 []    23.3    0.033
ZnF_C2H2   9/9     971   993 ..     1    23 []    21.9    0.088

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 9, from 194 to 216: score 23.3, E = 0.034
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C++  +s + Lk+H+++H   
   mKIAA1084   194    YQCSL-CKFLSPSFsVLKEHVKQH    216  

ZnF_C2H2: domain 2 of 9, from 224 to 247: score 19.3, E = 0.56
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C++ C+ + +s+++L+ H+ + H   
   mKIAA1084   224    LMCSE-CHATSRSQqELEAHVVsEH    247  

ZnF_C2H2: domain 3 of 9, from 309 to 331: score 12.3, E = 13
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + C++++ +++ Lk H  +H   
   mKIAA1084   309    YRCLF-CSYTCGQQrMLKTHAWKH    331  

ZnF_C2H2: domain 4 of 9, from 702 to 724: score 25.7, E = 0.0063
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + C++s  +++  k+H+rvH   
   mKIAA1084   702    YRCRL-CNYSSGNRgYIKQHLRVH    724  

ZnF_C2H2: domain 5 of 9, from 730 to 752: score 23.6, E = 0.028
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+Cpi C     + ++L+ Hm  H   
   mKIAA1084   730    YQCPI-CEHIAENSkDLESHMINH    752  

ZnF_C2H2: domain 6 of 9, from 758 to 781: score 21.4, E = 0.12
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ C++sf+ k++L++H r++H   
   mKIAA1084   758    HQCKQ-CKESFHYKsQLRNHEReQH    781  

ZnF_C2H2: domain 7 of 9, from 818 to 840: score 25.0, E = 0.011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+++ +++   ++H rvH   
   mKIAA1084   818    YRCDV-CDYTSTTYvGVRNHRRVH    840  

ZnF_C2H2: domain 8 of 9, from 846 to 868: score 23.3, E = 0.033
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+++s++++Lk Hm +H   
   mKIAA1084   846    YRCSL-CGYVCSHPpSLKSHMWKH    868  

ZnF_C2H2: domain 9 of 9, from 971 to 993: score 21.9, E = 0.088
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C i Cg+  +sk++L  Hm+ H   
   mKIAA1084   971    FCCCI-CGFESTSKeSLLDHMKEH    993  

//