hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00327/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1084  ( 1013 res)   mpf00327

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         107.9      2e-28   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/9     194   216 ..     1    24 []    13.6      4.7
zf-C2H2    2/9     224   247 ..     1    24 []    16.7     0.56
zf-C2H2    3/9     309   331 ..     1    24 []    10.2       10
zf-C2H2    4/9     702   724 ..     1    24 []    18.1     0.22
zf-C2H2    5/9     730   752 ..     1    24 []    20.8    0.031
zf-C2H2    6/9     758   781 ..     1    24 []    21.1    0.026
zf-C2H2    7/9     818   840 ..     1    24 []    20.2    0.048
zf-C2H2    8/9     846   868 ..     1    24 []    22.0    0.014
zf-C2H2    9/9     971   993 ..     1    24 []    17.5     0.32

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 9, from 194 to 216: score 13.6, E = 4.7
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  C+    + s Lk H + H   
   mKIAA1084   194    YQCS-LCKFLSPSFSVLKEHVKQH    216  

zf-C2H2: domain 2 of 9, from 224 to 247: score 16.7, E = 0.56
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C+ +C+ + +++ +L++H  ++H   
   mKIAA1084   224    LMCS-ECHATSRSQQELEAHVVSeH    247  

zf-C2H2: domain 3 of 9, from 309 to 331: score 10.2, E = 10
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C   C +++ ++  Lk+H  +H   
   mKIAA1084   309    YRCL-FCSYTCGQQRMLKTHAWKH    331  

zf-C2H2: domain 4 of 9, from 702 to 724: score 18.1, E = 0.22
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C   C++s  +++  k+Hlr+H   
   mKIAA1084   702    YRCR-LCNYSSGNRGYIKQHLRVH    724  

zf-C2H2: domain 5 of 9, from 730 to 752: score 20.8, E = 0.031
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+Cp +C     ++++L++H+  H   
   mKIAA1084   730    YQCP-ICEHIAENSKDLESHMINH    752  

zf-C2H2: domain 6 of 9, from 758 to 781: score 21.1, E = 0.026
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C+ +C++sF  ks+L++H r +H   
   mKIAA1084   758    HQCK-QCKESFHYKSQLRNHEREqH    781  

zf-C2H2: domain 7 of 9, from 818 to 840: score 20.2, E = 0.048
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C+++ ++    ++H+r+H   
   mKIAA1084   818    YRCD-VCDYTSTTYVGVRNHRRVH    840  

zf-C2H2: domain 8 of 9, from 846 to 868: score 22.0, E = 0.014
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  Cg+++s++ +Lk+H+ +H   
   mKIAA1084   846    YRCS-LCGYVCSHPPSLKSHMWKH    868  

zf-C2H2: domain 9 of 9, from 971 to 993: score 17.5, E = 0.32
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C  +Cg   ++k++L  H++ H   
   mKIAA1084   971    FCCC-ICGFESTSKESLLDHMKEH    993  

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