hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm04136/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1083 ( 614 res) mpm04136 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- AAA ATPases associated with a variety of cellula 69.8 3.3e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- AAA 1/1 372 508 .. 1 92 [] 69.8 3.3e-16 Alignments of top-scoring domains: AAA: domain 1 of 1, from 372 to 508: score 69.8, E = 3.3e-16 *->pgevvllvGppGsGKTTlaralarllgpgviyidge.........gg p + +ll+GppG GKT la+a+a +++ ++ i++ + ++ ++g+ mKIAA1083 372 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAsltskyvgeGE 418 qrirlalalark...dvlllDEitslld...................... + +r ++a ar+ +++++++DE++sll ++++++++ +++++ + + + + mKIAA1083 419 KLVRALFAVARElqpSIIFIDEVDSLLCerregehdasrrlktefliefd 468 .........vtviattn...dldpallrrrfdrrivllril<-* + ++ ++++v v+++tn++++ld+a+lr rf +r+++ +++ mKIAA1083 469 gvqsagddrVLVMGATNrpqELDEAVLR-RFIKRVYVSLPN 508 //