hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01355/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1080  ( 612 res)   mpj01355

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
VHS      Domain present in VPS-27, Hrs and STAM         209.0    4.2e-58   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VHS        1/1      38   171 ..     1   145 []   209.0  4.2e-58

Alignments of top-scoring domains:
VHS: domain 1 of 1, from 38 to 171: score 209.0, E = 4.2e-58
                   *->verliekATsesllaeeDWelileICDlinstqedgPkdAvralkKR
                      +e +++kAT++s+ + +DW+ i+ +C+++n++ + gP +A ++l+++
   mKIAA1080    38    LELWLNKATDPSMAE-QDWSAIQKFCEQVNTD-PSGPTHAPWLLAHK 82   

                   lnsnknphVallALtLLdtcVkNCGskFhlevaskeFlnreLvkliksky
                   ++s +++++al+ALt+L++c+++CG+kFh+eva+++Fln eL+k++ +ky
   mKIAA1080    83 IQS-PQEKEALYALTVLEICMNHCGEKFHSEVAKFRFLN-ELIKVLSPKY 130  

                   hlkldkDaVkekileliqeWadafCrtgkndpdlslvvdvydlLkkkg<-
                    + +++ +Vk +++e++++W+++f       p+  +++d+y++Lkk+g  
   mKIAA1080   131 LGAWATEKVKGRVIEILFSWTVWF-------PEDIKIRDAYQMLKKQG   171  

                   *
                    
   mKIAA1080     -   -    

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