hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01355/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1080  ( 612 res)   mpj01355

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
VHS             VHS domain                              233.4    3.2e-66   1
Alpha_adaptinC2 Adaptin C-terminal domain               182.7      6e-51   1
GAT             GAT domain                              164.1    2.4e-45   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
VHS               1/1      30   171 ..     1   155 []   233.4  3.2e-66
GAT               1/1     234   335 ..     1   106 []   164.1  2.4e-45
Alpha_adaptinC2   1/1     480   604 ..     1   125 []   182.7    6e-51

Alignments of top-scoring domains:
VHS: domain 1 of 1, from 30 to 171: score 233.4, E = 3.2e-66
                   *->mpsssasplerliekATdpslreeaeDwsliLdicDlInekiYqetg
                       + ++a +le +++kATdps+ e+  Dws i+++c+++n++   + g
   mKIAA1080    30    GGPGAAAALELWLNKATDPSMAEQ--DWSAIQKFCEQVNTD---PSG 71   

                   PkeAvrlIkKrinstknphvallALtlLdaCVkNCGsrFHlevaskeFln
                   P +A +l++++i+s +++++al+ALt+L++C+++CG++FH eva+++Fln
   mKIAA1080    72 PTHAPWLLAHKIQS-PQEKEALYALTVLEICMNHCGEKFHSEVAKFRFLN 120  

                   eLvklitrsppgrpakdkVkekileliqeWadafCKhnknkpdlsyivdl
                   eL+k+++++++g +a++kVk +++e++++W+++f       p+  +i+d+
   mKIAA1080   121 ELIKVLSPKYLGAWATEKVKGRVIEILFSWTVWF-------PEDIKIRDA 163  

                   yklLkrkG<-*
                   y++Lk++G   
   mKIAA1080   164 YQMLKKQG    171  

GAT: domain 1 of 1, from 234 to 335: score 164.1, E = 2.4e-45
                   *->lrpEkisKllselEeVrnnVrlLseMLsaydPgdaepddsElLqeLy
                      +++Ek+s ++s++EeVr++Vr+L eMLs+y++++ + +d+ +Lq++y
   mKIAA1080   234    EKSEKVSRRVSAVEEVRSHVRVLREMLSMYRRPGHALPDQQALQVVY 280  

                   erCrkmqprifqLlsdteDnDSDAellaeiLqaNDnLnnvilrYkrivrg
                   erC+k++p++f+L+sdt+D+D   ++laeiLqaND L++++ +Yk++v+g
   mKIAA1080   281 ERCEKLRPTLFRLASDTTDDD---DALAEILQANDLLTQGVRLYKQVVEG 327  

                   rtrvlgaaa<-*
                   r+   g+a+   
   mKIAA1080   328 RV-SAGNAV    335  

Alpha_adaptinC2: domain 1 of 1, from 480 to 604: score 182.7, E = 6e-51
                   *->pkpawlpsivvyessgLqIgltferrg.pespglgritltftNkssq
                      +kp++lp+ivvy+++g++I l+f+++g p++p++ ++ lt+++++ q
   mKIAA1080   480    VKPSSLPPIVVYDRNGFRILLHFSQTGaPGHPDVKVLLLTMMSTATQ 526  

                   pitnfvfqaAVPKslkLqLqpqsgsvlpaggpgaqP.aitQvlrvsnpqd
                   p+++ +fq+AVPKs++++Lqp+s+s lpa++p+++P +i+Q+l + np+ 
   mKIAA1080   527 PVWDVMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPaVISQTLLLDNPH- 575  

                   nkkplrlrikltYnlggqsvqeqgevsklP<-*
                    k+p+rlr+klt+n+ggq++ e+gev  +P   
   mKIAA1080   576 -KEPIRLRYKLTFNQGGQPFSEVGEVKDFP    604  

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