hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh01320/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1076 ( 855 res) mbh01320 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SET SET domain 189.8 4.5e-53 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SET 1/1 710 840 .. 1 261 [] 189.8 4.5e-53 Alignments of top-scoring domains: SET: domain 1 of 1, from 710 to 840: score 189.8, E = 4.5e-53 *->vqkgrwarlegfktegkGwGlratedIpkGefiiEYpGelitseeae ++k r+++l+ +k++++ wGl+a+e+I+++e++iEY+G i++ a+ mKIAA1076 710 QLKFRKKKLKFCKSHIHDWGLFAMEPIAADEMVIEYVGQNIRQVIAD 756 kreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPtys +re k+y+d+g++s+ Y+f+ d+ mKIAA1076 757 MRE------KRYEDEGIGSS--YMFRVDH--------------------- 777 PlfWseeeleLkGTqllevdkeeleeydllaeeievflqhklFpdveeef mKIAA1076 - -------------------------------------------------- - sfedflWaasivsSRafslvegvnreeensegslelviDAtrkGNiaRFi + +iDAt+ GN+aRFi mKIAA1076 778 ----------------------------------DTIIDATKCGNFARFI 793 NHSCePNcevqvvfvdgedlgdsdvtDeaglepgdprivlfAlrdIpaGe NHSC+PNc+++v++v+ + ++iv++++++I +e mKIAA1076 794 NHSCNPNCYAKVITVE-----------------SQKKIVIYSKQHINVNE 826 ELtydYgydksnge<-* E+tydY+++ ++ mKIAA1076 827 EITYDYKFPIEDVK 840 //