hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mie/mie28040/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1075  ( 179 res)   mie28040

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PTB      Phosphotyrosine-binding domain, phosphotyros   107.2    1.9e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PTB        1/1      41   179 .]     1   156 []   107.2  1.9e-27

Alignments of top-scoring domains:
PTB: domain 1 of 1, from 41 to 179: score 107.2, E = 1.9e-27
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr..sekkk
                       +g++++V+YL sve+++ +       g+q++++a +   + s ++ 
   mKIAA1075    41    RQGAACSVLYLTSVETESLT-------GPQAVAKASSAALscSPVPV 80   

                   pqkvilsvSsdgvklidektk.qvlaehplrrIsfcaadpq.r.w.nt.G
                   p  v+++vS +g++l+d+++k ++++++p+++I+f++ dpq+r+w+n++G
   mKIAA1075    81 PAIVHFKVSAQGITLTDNQRKlFFRRHYPVNSITFSSTDPQdRrWtNPdG 130  

                   gdgstdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedialaig
                         ++++Fg++a++pgs       +++ CH+F   ++    ++++++
   mKIAA1075   131 A-----TSKIFGFVAKKPGS------PWENVCHLFAELDPD---QPASAI 166  

                   qaFqvayelklkarse<-*
                     F +++ l +++      
   mKIAA1075   167 VTFITKVLLGQRK---    179  

//