hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/meg/meg01168/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1073  ( 424 res)   meg01168

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PTPc_motif Protein tyrosine phosphatase, catalytic do    34.1    1.9e-05   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PTPc_motif   1/1     163   294 ..     1    92 []    34.1  1.9e-05

Alignments of top-scoring domains:
PTPc_motif: domain 1 of 1, from 163 to 294: score 34.1, E = 1.9e-05
                   *->tvkhyhytgWpDhvekdsgvPedsileflravrk...PivVHCSAGv
                      + + +h+ +          +   + l++ ++v+++++++vVHCS+G+
   mKIAA1073   163    SRYIHHFKTCFQL------IL-AGALRIADKVESgktSVVVHCSDGW 202  

                   GRTGtfvaidillqq...................................
                   +RT+++ ++ +l+ ++  ++ ++ +   +++  + +++ + + +++++++
   mKIAA1073   203 DRTAQLTSLAMLMLDgyyrtirgfevlvekewlsfghrfqlrvghgdknh 252  

                   .........vdifdtvkelRsqRpgmvqteeQYlFlyralle<-*
                    + ++++  + + d+v+++  q p +++ +e +l  +  +l+   
   mKIAA1073   253 adadrspvfLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLY    294  

//