hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/meg/meg01168/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1073  ( 424 res)   meg01168

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
Myotub-related Myotubularin-related                      29.8    1.8e-07   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Myotub-related   1/1     124   198 ..     1   123 []    29.8  1.8e-07

Alignments of top-scoring domains:
Myotub-related: domain 1 of 1, from 124 to 198: score 29.8, E = 1.8e-07
                   *->YelCpsYPakLvVPksisDdeLkkvAkFRsrgRlPV..Ls.wrHq.e
                      YelC++YPa+LvVP+ i D+eLk+vA+FRsrgR+PV++Ls+++H  +
   mKIAA1073   124    YELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVsrLSrYIHHfK 170  

                   ngAvIvRcSQPLvGfsgkRckeDEkllkailkanaiDekiqskklyIvDa
                   +   ++ ++                         a         l+I D 
   mKIAA1073   171 TCFQLILAG-------------------------A---------LRIADK 186  

                   RprtnAlaNrAkGGGyEneenYpnaelvfl<-*
                                      e+    ++v++   
   mKIAA1073   187 ------------------VESGKTSVVVHC    198  

//