hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj03252/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1065  ( 658 res)   mfj03252

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ENTH     ENTH domain                                    286.4    3.7e-82   1
UIM      Ubiquitin interaction motif                     19.5      0.077   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ENTH       1/1      35   158 ..     1   140 []   286.4  3.7e-82
UIM        1/2     292   309 ..     1    18 []    22.5   0.0098
UIM        2/2     317   334 ..     1    18 []     1.8  1.3e+02

Alignments of top-scoring domains:
ENTH: domain 1 of 1, from 35 to 158: score 286.4, E = 3.7e-82
                   *->yseaeikVreATnnDpwGPsgklmaeIaeaTyneklyvefeeimsvL
                      yseaeikVreAT+nDpwGPs++lm+eIa++Tyn   +v+f eims+ 
   mKIAA1065    35    YSEAEIKVREATSNDPWGPSSSLMTEIADLTYN---VVAFSEIMSMV 78   

                   wkRLnkddknegknWRhVYKaLtlLeYLlknGSErvvddcreniyHkfnI
                   wkRLn d +  gknWRhVYKaLtlL+YL+k+GSErv+++creni+    I
   mKIAA1065    79 WKRLN-D-H--GKNWRHVYKALTLLDYLIKTGSERVAQQCRENIF---AI 121  

                   rtLedFqyVfiDenGkmlrfDqGinVRkKAkelleLLnDderL<-*
                   +tL+dFqy  iD++Gk    DqGinVR+K+k+l++LL+D+erL   
   mKIAA1065   122 QTLKDFQY--IDRDGK----DQGINVREKSKQLVALLKDEERL    158  

UIM: domain 1 of 2, from 292 to 309: score 22.5, E = 0.0098
                   *->mdEEedLqlALalSlqea<-*
                      ++EE +LqlALa+S++ a   
   mKIAA1065   292    GEEELQLQLALAMSREVA    309  

UIM: domain 2 of 2, from 317 to 334: score 1.8, E = 1.3e+02
                   *->mdEEedLqlALalSlqea<-*
                        ++  Lq AL+ S+ +    
   mKIAA1065   317    RGDDLRLQMALEESRRDT    334  

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