hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm10227/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1064  ( 912 res)   mpm10227

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C3H1 zinc finger                                     67.3    1.9e-15   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C3H1   1/3      81   106 ..     1    31 []    26.4    0.004
ZnF_C3H1   2/3     110   135 ..     1    31 []    34.7  1.2e-05
ZnF_C3H1   3/3     136   159 ..     1    31 []    18.8     0.49

Alignments of top-scoring domains:
ZnF_C3H1: domain 1 of 3, from 81 to 106: score 26.4, E = 0.004
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                      k k ++Ck+F   G   +C  Gd+C f+H+    
   mKIAA1064    81    KGK-VICKYF-VEG---RCTWGDHCNFSHDI    106  

ZnF_C3H1: domain 2 of 3, from 110 to 135: score 34.7, E = 1.2e-05
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                      k + elCkf+  +G   +C + ++C+++H++   
   mKIAA1064   110    KKR-ELCKFY-ITG---FCARAENCPYMHGD    135  

ZnF_C3H1: domain 3 of 3, from 136 to 159: score 18.8, E = 0.49
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                           +Ck ++ +G   +C  Gd+C f+H++   
   mKIAA1064   136    ----FPCKLYHTTG---NCINGDDCMFSHDP    159  

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