hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm10227/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1064  ( 912 res)   mpm10227

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and sim    63.1      6e-15   3
Extensin_2 Extensin-like region                        -129.0       0.19   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
zf-CCCH      1/3      81   106 ..     1    27 []    26.3  0.00069
zf-CCCH      2/3     110   135 ..     1    27 []    29.0  0.00011
zf-CCCH      3/3     137   159 ..     1    27 []    19.0    0.026
Extensin_2   1/1     160   431 ..     1   385 []  -129.0     0.19

Alignments of top-scoring domains:
zf-CCCH: domain 1 of 3, from 81 to 106: score 26.3, E = 0.00069
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      +++++C++f + G+C  Gd C+F+H+    
   mKIAA1064    81    KGKVICKYFVE-GRCTWGDHCNFSHDI    106  

zf-CCCH: domain 2 of 3, from 110 to 135: score 29.0, E = 0.00011
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                      +k+elC+f+ + G+C + ++C+++Hg+   
   mKIAA1064   110    KKRELCKFYIT-GFCARAENCPYMHGD    135  

zf-CCCH: domain 3 of 3, from 137 to 159: score 19.0, E = 0.026
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                          +C+ +++tG C  Gd+C F+H++   
   mKIAA1064   137    ----PCKLYHTTGNCINGDDCMFSHDP    159  

Extensin_2: domain 1 of 1, from 160 to 431: score -129.0, E = 0.19
                   *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy
                      l+  +  l+   l+ +a+a  + +      k+      P+P      
   mKIAA1064   160    LTEETRELLDKMLADDAEAGAEDEKEVEELKKQGI--NPLPK----- 199  

                   kSPPPpkkpYvYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSPPpPv
                     PPP     v   P PP        PP                      
   mKIAA1064   200 --PPPG----VGLLPTPP-------RPP---------------------- 214  

                   ykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkSPPPPp
                        PP Pt sp  +++   PPPPp       pPp         PPPP 
   mKIAA1064   215 ----GPPAPT-SPNGRPMQGGPPPPP-------PPP---------PPPPG 243  

                   yvYkspPpPvkkripyvYkSPPPPpPYvYkSpPppvkky.iyksppppep
                   +   s P       +    SP      +Y+   p +  ++i   p+    
   mKIAA1064   244 PPQMSLP-------THEPLSPQQLQQDMYNKKIPSL--FeIVVRPTGQLA 284  

                   hkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYkspsppkyVYkS
                   +k   + P P  P               + P  P +              
   mKIAA1064   285 EKLGVRFPGPGGP---------------SGPMGPGP-----------NMG 308  

                   pPpPvipykYkSPPPPkkkyspaPrkpyvYkSPPPPtyvYkSpPpPykpp
                   pP P+       P  P  +++  P  ++    P   + ++    p  +p 
   mKIAA1064   309 PPGPM-----GGPMHPDMHPDMHPDMHPDMH-PDMHPDMHPDMHPDMHPD 352  

                   tppkiyksPPPPtPvyvYkspPpippiksssppPvyvYkSpPppvysPPP
                    p  +   P PP         P  pp+ ++ p   +     Pp    PP 
   mKIAA1064   353 MPMGPGMNPGPP-------MGPGGPPMMPYGPGDSPHSGMMPP---IPPA 392  

                   PyvYssPPPPvyvynsaPvykksPPkhhYiYsSPPPphh<-*
                      Y+   P     +  P  +         YsS         
   mKIAA1064   393 QNFYENFYPQQEGMEMEPGLVGDAGDTGNWYSSDEDEGG    431  

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