hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj05092/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1063  ( 570 res)   mfj05092

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UCH      Ubiquitin carboxyl-terminal hydrolase          284.8    1.1e-81   1
zf-UBP   Zn-finger in ubiquitin-hydrolases and other     22.7     0.0024   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-UBP     1/1     108   177 ..     1    82 []    22.7   0.0024
UCH        1/1     218   562 ..     1   273 []   284.8  1.1e-81

Alignments of top-scoring domains:
zf-UBP: domain 1 of 1, from 108 to 177: score 22.7, E = 0.0024
                   *->CvstCgl.tenlWlCLtCGqvgCGryqylgdGgngHaleHyretgHp
                      C  +Cg++ ++l  CL+C + gC  +        +H  +H +  +H 
   mKIAA1063   108    C-HVCGIhLNRLHSCLYCVFFGCFTK--------KHIHDHAKSKRHN 145  

                   lavklktqstwcyacdaYvhqeddeedalDgkylvd<-*
                   la++l  +  +c+ c++Y+++ d e   +  +  ++   
   mKIAA1063   146 LAIDLMYGGIYCFLCQDYIYDKDIEI--IAKE--EQ    177  

UCH: domain 1 of 1, from 218 to 562: score 284.8, E = 1.1e-81
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyeseinesnpl
                       g++GL+NlGNTC+mN+++Q+L+h+p lrd++lsd+++     +  +
   mKIAA1063   218    IGLRGLINLGNTCFMNCIVQALTHTPLLRDFFLSDRHR-----CEMQ 259  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcaladLfnalqsg.yksvvpsplkflqfkttlgkineefsgym
                   +++ +l+c+++ Lf++++sg++++  p++l++     +++  ++ ++gy 
   mKIAA1063   260 SPSSCLVCEMSSLFQEFYSGhRSPHIPYKLLH-----LVWTHARHLAGYE 304  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   QqDAhEFllfLLdgLhedlnrvnkkpytepesdkrpdkaaeawknhslrn
                   QqDAhEFl + Ld Lh+ +++    ++++ +                + +
   mKIAA1063   305 QQDAHEFLIAALDVLHRHCKGDDNGKKANNP----------------NHC 338  

                RF xxxxxxxxxxxxxx                                    
                   eslitdlFqGqles....................................
                    ++i+++F+G l s+ +++ +++ +++ ++  + + + ++++++  + ++
   mKIAA1063   339 NCIIDQIFTGGLQSdvtcqvchgvsttidpfwdisldlpgsstpfwplsp 388  

                RF                                                   
                   ..................................................
                   +++++  +++++ +++++ +++ ++ +++++ +++ + +++++++ ++++
   mKIAA1063   389 gsegsvvngeshasgtttltdclrrftrpehlgssakikcsgchsyqest 438  

                RF  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   .rlkisrLPpiLiihLKRFkydgetgmnkKindkVefPleLdlssyctae
                   ++l++++LP + ++hLKRF+ +    +++Ki + V+fPleLd++++++++
   mKIAA1063   439 kQLTMKKLPIVACFHLKRFEHSAK--LRRKITTYVSFPLELDMTPFMASS 486  

                RF                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   .................pplkYeLyaVvvHsGsslsgGHYiayikkkkkn
                   +++  +++ +++ ++ +++ kY+L+aVv+H G +l++GHY+++i  + ++
   mKIAA1063   487 kesrmngqyqqpldslnNDNKYSLFAVVNHQG-TLESGHYTSFI--RQHK 533  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   nkWykfDDekVsevseeevlersssAYiLFY<-*
                   ++W+k+DD  ++ +s  +v    s++Y+LFY   
   mKIAA1063   534 DQWFKCDDAIITKASIKDV--LDSEGYLLFY    562  

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