hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg17754/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1062  ( 1416 res)   mbg17754

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AAA      ATPases associated with a variety of cellula    55.7    5.8e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AAA        1/2       1   180 [.     1    92 []    23.0    0.041
AAA        2/2    1062  1247 ..     1    92 []    32.7  5.1e-05

Alignments of top-scoring domains:
AAA: domain 1 of 2, from 1 to 180: score 23.0, E = 0.041
                   *->pgevvllvGppGsGKTTlaralarllgp.....gviyidge......
                         vv + G +G+GKTT++  l +l++p++++  ++  d   + ++ 
   mKIAA1062     1    ---VVSFLGHNGAGKTTTMSILTGLFPPtsgsaTIYGHDIRtemdei 44   

                   ..................................................
                   +++ +   +++   ++   +++    ++ ++  +++ +++ ++  ++ + 
   mKIAA1062    45 rknlgmcpqhnvlfdrltveehlwfysrlksmaqeeirketdkmiedlel 94   

                   ............ggqrirlalalark...dvlllDEitslld........
                   ++++++  +  +gg++ +l +a+a  ++++ ++lDE+t+  d   ++   
   mKIAA1062    95 snkrhslvqtlsGGMKRKLSVAIAFVggsRAIILDEPTAGVDpyarraiw 144  

                   .........vtviattn.dldpallrrrfdrrivllril<-*
                   ++ ++ + ++t+++ t++    +ll    dr+ ++  +    
   mKIAA1062   145 dlilkykpgRTILLSTHhMDEADLLG---DRIAIISHGK    180  

AAA: domain 2 of 2, from 1062 to 1247: score 32.7, E = 5.1e-05
                   *->pgevvllvGppGsGKTTlaralarllgp..gviyidge.........
                      pge+ +l G +G+GKT + ++l +    ++g  +++g +  ++  + 
   mKIAA1062  1062    PGECFGLLGVNGAGKTSTFKMLTGDESTtgGEAFVNGHsvlkdllqv 1108 

                   ..................................................
                   +++ +   + +   ++   +++ +   + ++   +++ +  +   ++ + 
   mKIAA1062  1109 qqslgycpqfdalfdeltarehlqlytrlrgipwkdeaqvvkwaleklel 1158 

                   ............ggqrirlalalark...dvlllDEitslld........
                    +  ++  +  +gg + +l  a+a  + +  ++lDE+t+  d + ++ + 
   mKIAA1062  1159 tkyadkpagtysGGNKRKLSTAIALIgypAFIFLDEPTTGMDpkarrflw 1208 

                   ..........vtviattndldpallrrrfdrrivl.lril<-*
                   ++ +++ + +++v++t++ +++   +++ +  i++++r +   
   mKIAA1062  1209 nlildliktgRSVVLTSH-SMEECEALCTRLAIMVnGRLR    1247 

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