hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg17754/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1062  ( 1416 res)   mbg17754

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ABC_tran ABC transporter                                378.7     6e-110   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ABC_tran   1/2       1   179 [.     1   206 []   206.5  4.2e-58
ABC_tran   2/2    1063  1244 ..     1   206 []   172.1  9.2e-48

Alignments of top-scoring domains:
ABC_tran: domain 1 of 2, from 1 to 179: score 206.5, E = 4.2e-58
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->GevvalvGpNGaGKSTLLklisGllqiPdrteGeilidpGedltdls
                        vv ++G+NGaGK+T + +++Gl + P  t+G+ +i  G+d++ + 
   mKIAA1062     1    --VVSFLGHNGAGKTTTMSILTGLFP-P--TSGSATIY-GHDIRTEM 41   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   lealrklgrigvvpQdpqlflnptlTvrenlafglrlkgplekeerdefa
                    e +++   +g++pQ++ lf   +lTv+e+l+f+ rlk++   e      
   mKIAA1062    42 DEIRKN---LGMCPQHNVLF--DRLTVEEHLWFYSRLKSMAQEE-----I 81   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   darveeaLervGladlldrlpqglDtlgdgggtLSGGqkQRvalARaLlt
                   +++ ++++e++ l +++++l+           tLSGG+k++++ A a++ 
   mKIAA1062    82 RKETDKMIEDLELSNKRHSLV----------QTLSGGMKRKLSVAIAFVG 121  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   kpklLlLDEPTagLDpasraqllellrelrqrggtvllitHdlefvdrla
                    ++ ++LDEPTag Dp +r+++++l+ +++  g+t+ll tH+++++d l 
   mKIAA1062   122 GSRAIILDEPTAGVDPYARRAIWDLILKYKP-GRTILLSTHHMDEADLLG 170  

                RF xxxxxxxxx   
                   drilvlenG<-*
                   dri+++++G   
   mKIAA1062   171 DRIAIISHG    179  

ABC_tran: domain 2 of 2, from 1063 to 1244: score 172.1, E = 9.2e-48
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->GevvalvGpNGaGKSTLLklisGllqiPdrteGeilidpGedltdls
                      Ge  +l+G NGaGK++ +k+++G ++    t Ge  ++ G+ +    
   mKIAA1062  1063    GECFGLLGVNGAGKTSTFKMLTGDES-T--TGGEAFVN-GHSV---- 1101 

                RF xxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   lealrklgr.igvvpQdpqlflnptlTvrenlafglrlkgplekeerdef
                   l +l ++++++g++pQ+  lf   +lT+re+l ++ rl g+++k+     
   mKIAA1062  1102 LKDLLQVQQsLGYCPQFDALF--DELTAREHLQLYTRLRGIPWKD----- 1144 

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   adarveeaLervGladlldrlpqglDtlgdgggtLSGGqkQRvalARaLl
                     + v +aLe++ l++ +d+++          gt+SGG k++++ A aL+
   mKIAA1062  1145 EAQVVKWALEKLELTKYADKPA----------GTYSGGNKRKLSTAIALI 1184 

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   tkpklLlLDEPTagLDpasraqllellrelrqrggtvllitHdlefvdrl
                     p +++LDEPT+g Dp++r+ l++l+ +l + g++v+l++H++e+ + l
   mKIAA1062  1185 GYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEAL 1234 

                RF xxxxxxxxxx   
                   adrilvlenG<-*
                   ++r++++ nG   
   mKIAA1062  1235 CTRLAIMVNG    1244 

//