hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp15027/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1061  ( 696 res)   mbp15027

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IGc2     Immunoglobulin C-2 Type                         84.2    1.6e-20   2
IG       Immunoglobulin                                  69.2      5e-16   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IGc2       1/2     115   182 ..     1    56 []    28.4    0.001
IG         1/2     109   192 ..     1    58 []    30.5  0.00024
IGc2       2/2     207   274 ..     1    56 []    55.8  5.5e-12
IG         2/2     201   285 ..     1    58 []    38.7  7.8e-07

Alignments of top-scoring domains:
IGc2: domain 1 of 2, from 115 to 182: score 28.4, E = 0.001
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt
                        G s +LtC  +gd  p I W+++g  l+  + ++ ++ + +++L 
   mKIAA1061   115    TVGLSTVLTCAIRGDLRPPIIWKRnGLTLSflgledindfgEDGSLY 161  

                   iknvsleDsGlYtCvArNsvg<-*
                   i+ v+  + G+YtC A ++     
   mKIAA1061   162 ITKVTTVHMGNYTCHALGHEQ    182  

IG: domain 1 of 2, from 109 to 192: score 30.5, E = 0.00024
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                       + +tv +G s +LtC + ++  + i W++++ + +  +  + ++ +
   mKIAA1061   109    VSvTTVTVGLSTVLTCaIRgdlrpPIIWKrngltlsflgledindfg 155  

                   ....LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-*
                    +++L I++vt  +    G+YtC a ++ +  +  +  L+V    
   mKIAA1061   156 edgsLYItKVTTVHM---GNYTCHALgHEQLVQ--THVLQVN    192  

IGc2: domain 2 of 2, from 207 to 274: score 55.8, E = 5.5e-12
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt
                      ++G +++L+C+a+g p p I Wlk+g  ++++ +++ +   +gs+L+
   mKIAA1061   207    EPGVAASLRCHAEGIPLPRIIWLKnGMDVStqmskqlsllaNGSELH 253  

                   iknvsleDsGlYtCvArNsvg<-*
                   i +v++eD G YtC+A N+vg   
   mKIAA1061   254 IGSVRYEDTGAYTCIAKNEVG    274  

IG: domain 2 of 2, from 201 to 285: score 38.7, E = 7.8e-07
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      p+++   +G  ++L+C+a++ + ++i W++++ + +++ +++ +   
   mKIAA1061   201    PEtQAQEPGVAASLRChAEgiplpRIIWLkngmdvstqmskqlslla 247  

                   ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   +++ L+I++v++eD+   G YtC a++  g+++      L ++   
   mKIAA1061   248 ngseLHIgSVRYEDT---GAYTCIAKneVGVDED--ISSLFIE    285  

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