hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp15027/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1061  ( 696 res)   mbp15027

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ig       Immunoglobulin domain                           59.2      9e-14   2
I-set    Immunoglobulin I-set domain                     58.1    1.9e-13   1
V-set    Immunoglobulin V-set domain                     10.7      0.052   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ig         1/2     117   177 ..     1    65 []    25.5   0.0013
V-set      1/2      95   192 ..     1   130 []     9.6    0.067
ig         2/2     209   269 ..     1    65 []    33.7  4.2e-06
I-set      1/1     195   285 ..     1    97 []    58.1  1.9e-13
V-set      2/2     196   285 ..     1   130 []     1.1     0.48

Alignments of top-scoring domains:
ig: domain 1 of 2, from 117 to 177: score 25.5, E = 0.0013
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G s  LtC     g+  + + W+rng +l    l ++   + d++  
   mKIAA1061   117    GLSTVLTCAI--RGDLRPPIIWKRNGLtLSfLGLEDINDFGEDGS-- 159  

                   tsLtitnvtpeDggtYtCvv<-*
                     L it+vt  + g+YtC++   
   mKIAA1061   160 --LYITKVTTVHMGNYTCHA    177  

V-set: domain 1 of 2, from 95 to 192: score 9.6, E = 0.067
                   *->qstvtqepprLLLASLfWpt.....svtvaeGgsvtLpCtysGtfdd
                      +++v q++ +         ++++ ++ tv +G s  L+C  +   +d
   mKIAA1061    95    AFQVIQLSLA---------PkdkvsVTTVTVGLSTVLTCAIR---GD 129  

                   sssssgtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgr
                        ++  ++W r++ ++         s++   + +        +f + 
   mKIAA1061   130 L----RP-PIIWKRNgLTL---------SFLGLEDIN--------DFGED 157  

                   vrfsgnpskgdfsLtIsnlqlsDsGtYyCa.......gggtrLtVl<-*
                    +           L I++++  + G Y+C+  +++   +  +L+V    
   mKIAA1061   158 GS-----------LYITKVTTVHMGNYTCHalgheqlVQTHVLQVN    192  

ig: domain 2 of 2, from 209 to 269: score 33.7, E = 4.2e-06
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty
                      G  ++L+C++  +g p +++ Wl+ng ++ + ++   s   ng+   
   mKIAA1061   209    GVAASLRCHA--EGIPLPRIIWLKNGMdVStQMSKQlSLLANGSE-- 251  

                   qtsLtitnvtpeDggtYtCvv<-*
                      L+i +v++eD+g YtC +   
   mKIAA1061   252 ---LHIGSVRYEDTGAYTCIA    269  

I-set: domain 1 of 1, from 195 to 285: score 58.1, E = 1.9e-13
                   *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd..Gqplssvl
                      P++   p+ +    G +a++ C+++G P P + W+K++ +   +   
   mKIAA1061   195    PVIRVYPETQAQEPGVAASLRCHAEGIPLPRIIWLKNgmDVSTQM-- 239  

                   lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt
                     s+ ++  ++g    + L I  v  +D G YtC+A+N++G +e   +L 
   mKIAA1061   240 --SKQLSLLANG----SELHIGSVRYEDTGAYTCIAKNEVGVDEDISSLF 283  

                   Vq<-*
                   ++   
   mKIAA1061   284 IE    285  

V-set: domain 2 of 2, from 196 to 285: score 1.1, E = 0.48
                   *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss
                       + v+ e+++              ++G  ++L+C+      +     
   mKIAA1061   196    VIRVYPETQA----------Q---EPGVAASLRCHAE----GI---- 221  

                   gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn
                      +++W +                          +vs + ++  ++ +n
   mKIAA1061   222 PLPRIIWLK-NGM----------------------DVSTQMSKQLSLLAN 248  

                   pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-*
                   +s     L+I +++ +D+G Y+C  +++ + ++    L ++   
   mKIAA1061   249 GS----ELHIGSVRYEDTGAYTCIaknevgvdEDISSLFIE    285  

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