hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbh/mbh01281/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1060 ( 1115 res) mbh01281 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CYCc Adenylyl- / guanylyl cyclase, catalytic doma 381.1 6.4e-110 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CYCc 1/2 259 467 .. 1 231 [] 233.7 1.6e-65 CYCc 2/2 871 1085 .. 1 231 [] 147.6 1.3e-39 Alignments of top-scoring domains: CYCc: domain 1 of 2, from 259 to 467: score 233.7, E = 1.6e-65 *->eekkktdrLLyqlLPasvAeslkegr..................epv ek++ +rLL +lLPa++A+++k++ ++ ++++ ++ +++++ + mKIAA1060 259 FEKRQQERLLLSLLPAHIAMEMKAEIiqrlqgpkagqmentnnfHNL 305 paesydsVTilFsDIvgFTslcsastPeqvvtlLndlysrFDriidrhgg + +++ +V+il++DIvgFT+l+s ++P ++v +Ln+l+ +FD+i +++ mKIAA1060 306 YVKRHTNVSILYADIVGFTRLASDCSPGELVHMLNELFGKFDQIAKENE- 354 srvvvYKVeTiGDaYMVvsGlPeeaetsaesklkddglteawcfavqhae + ++ +GD+Y++vsGlP + +ha+ mKIAA1060 355 ----CMRIKILGDCYYCVSGLPISLP--------------------NHAK 380 liadeaLdmveslktvkvphrkgelpgeglrvRiGiHtGpVvaGVvGlrm +++ ++Ldm+e++k v + +g ++++R+G+H+G V++GV+Gl + mKIAA1060 381 NCVKMGLDMCEAIKKVRDA------TGVDINMRVGVHSGNVLCGVIGLQK 424 pRYclFGdTVNlASRmEStgdpgqIqvSeetyslLqlgqaerrekggfef + Y+++ ++V+lA+ mE+ g+pg++++S+ t ++L +g + + mKIAA1060 425 WQYDVWSHDVTLANHMEAGGVPGRVHISSVTLEHL---------NGAYKV 465 ee<-* ee mKIAA1060 466 EE 467 CYCc: domain 2 of 2, from 871 to 1085: score 147.6, E = 1.3e-39 *->eekkktdrLLyqlLPasvAeslkegr...epvpaesydsVTilFsDI +++ + LL ++LPa+vAe+ + ++e+ +++syd+V ++F+ I mKIAA1060 871 TMENLNRVLLENVLPAHVAEHFLARSlknEELYHQSYDCVCVMFASI 917 vgFTslc....sastPeqvvtlLndlysrFDriidrhggsrv.vvYKVeT ++F +++++++ + ++ +lLn++ FD+++++ + + v+K++T mKIAA1060 918 PDFKEFYtesdVNKEGLECLRLLNEIIADFDDLLSKPK---FsGVEKIKT 964 iGDaYMVvsGlPeeaetsae.s.k.lkddglteawcfavqhaeliadeaL iG +YM++ Gl + +e+ + +++ + h+ ++++a mKIAA1060 965 IGSTYMAATGLSAVPS--QEhAqEpER----------QYMHIGTMVEFAY 1002 dmveslktvkvphrkgelpgeglrvRiGiHtGpVvaGVvGlrmpRYclFG v l+ ++ h+ ++++++R+Gi+ GpV aGV+G+ +p Y+++G mKIAA1060 1003 ALVGKLDA-INKHS-----FNDFKLRVGINHGPVIAGVIGAQKPQYDIWG 1046 dTVNlASRmEStgdpgqIqvSeetyslLqlgqaerrekggfefee<-* +TVN+ASRm Stg+ ++Iqv+eet ++L + ++ ++ + mKIAA1060 1047 NTVNVASRMDSTGVLDKIQVTEETSLIL------QTLGYTCTCRG 1085 //