hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00228/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1055  ( 979 res)   mpf00228

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable   214.7    8.2e-60   1
PH       Pleckstrin homology domain.                     46.6    3.3e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1      49   155 ..     1    82 []    46.6  3.3e-09
TBC        1/1     675   895 ..     1   310 []   214.7  8.2e-60

Alignments of top-scoring domains:
PH: domain 1 of 1, from 49 to 155: score 46.6, E = 3.3e-09
                   *->vikeGwLlkks....k.swkkryfvLfn..gvLlyyksk...kpkgs
                        ++G+L k+s+++++++++ r+fv+++++ +L+y+ks+++  p g 
   mKIAA1055    49    SRLCGYLQKLSgkgpLrGYRSRWFVFDSrrCYLYYFKSPqdaLPLGH 95   

                   ipLsgcsvre.p.............cFeivt.drtlllqAeseeereeWv
                   +++ ++ ++ + +++  +++ +++  F++++ + + +l+A++ e ++ W+
   mKIAA1055    96 LDIADACFSYqGrdeaaepgadpptHFQVHSaGAVTVLKAPNRELMTYWL 145  

                   ealqsaiaka<-*
                   + lq+   ++   
   mKIAA1055   146 QELQQKRWEY    155  

TBC: domain 1 of 1, from 675 to 895: score 214.7, E = 8.2e-60
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      +r G+p+++R +VWk + + + ++ ++  +                 
   mKIAA1055   675    IRAGIPHEHRSKVWKWCVDRHTRKFKDSME----------------- 704  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                     +d++++ll ++ +k+  ++                             
   mKIAA1055   705 --PDYFQTLLQKALEKQNPAS----------------------------- 723  

                   dqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                   +qIe+Dl RT+p++ ++ ++              ++g+++Lr vL+a+s+
   mKIAA1055   724 KQIELDLLRTLPNNKHYSSP-------------TSEGIQKLRSVLLAFSW 760  

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                   +np+  +gYcQG+n l+a+ Ll++   d edAFwc+v + e   p+    
   mKIAA1055   761 RNPD--IGYCQGLNRLVAVALLYL---DQEDAFWCLVTIVEVFMPR---- 801  

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl
                       +yt++l g q dq+v+++ll e lP L++H++++            
   mKIAA1055   802 ---DYYTKTLLGSQVDQRVFRDLLSEKLPRLHTHFEQY------------ 836  

                   eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala
                    +d +l ++ WfL++F + +  +++++iwD +++e    g++++f++ala
   mKIAA1055   837 KVDYTLITFNWFLVVFVDSVVSDILFKIWDSFLYE----GPKVIFRFALA 882  

                   iLklnedkllkld<-*
                   ++k++e+++lkl    
   mKIAA1055   883 LFKYKEEEILKLQ    895  

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