hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00228/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1055  ( 979 res)   mpf00228

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      TBC domain                                     195.6      8e-55   1
PH       PH domain                                       32.3    1.1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1      49   152 ..     1    92 []    32.3  1.1e-05
TBC        1/1     675   894 ..     1   219 []   195.6    8e-55

Alignments of top-scoring domains:
PH: domain 1 of 1, from 49 to 152: score 32.3, E = 1.1e-05
                   *->vikeGwLlkkg...gkkswkkRyfvLfn..dvLlyykdkk.kkpkgs
                         +G+L+k ++++ +++++ R+fv+ +++ +L+y+k+++++ p g 
   mKIAA1055    49    SRLCGYLQKLSgkgPLRGYRSRWFVFDSrrCYLYYFKSPQdALPLGH 95   

                   ipLsgiqvekvpdn.......krkncFeirt.dretlllqaeseeerkeW
                   +++ ++ + +  + +  +++ + +  F++++ +  + +l+a++ e ++ W
   mKIAA1055    96 LDIADACFSYQGRDeaaepgaDPPTHFQVHSaGA-VTVLKAPNRELMTYW 144  

                   vkaiqsair<-*
                   ++ +q+  r   
   mKIAA1055   145 LQELQQK-R    152  

TBC: domain 1 of 1, from 675 to 894: score 195.6, E = 8e-55
                   *->vkeGvpsstrakVWavcsgAyqlrY...AsageYerllrrgdekesq
                      ++ G p   r kVW  c     ++++++  ++++  ll++  ek   
   mKIAA1055   675    IRAGIPHEHRSKVWKWCVDRHTRKFkdsMEPDYFQTLLQKALEKQNP 721  

                   avdkIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQG
                   a  +Ie D+ RtL+ +  + s    egi+kLr vL A+sw+nPd+gYcQG
   mKIAA1055   722 ASKQIELDLLRTLPNNKHYSSP-TSEGIQKLRSVLLAFSWRNPDIGYCQG 770  

                   MNVvaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLd
                    N ++A  Ll     e+AF++L  ++e  +P  Yy+++l G+  Dq+v+ 
   mKIAA1055   771 LNRLVAVALLYL-DQEDAFWCLVTIVEVFMPRDYYTKTLLGSQVDQRVFR 819  

                   sfveellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLF
                     + e+lprL ++ ++  vd   + + wfL ++ ++   ++ ++I+D + 
   mKIAA1055   820 DLLSEKLPRLHTHFEQYKVDYTLITFNWFLVVFVDSVVSDILFKIWDSFL 869  

                   adGivllfrvaLAvLkilkeqiLda<-*
                    +G  + fr aLA  k   e+iL     
   mKIAA1055   870 YEGPKVIFRFALALFKYKEEEILKL    894  

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