hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj42114/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1054 ( 752 res) mfj42114 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- MFS_1 Major Facilitator Superfamily 121.7 1.4e-32 1 DUF1228 Protein of unknown function (DUF1228) -19.0 0.094 1 Sugar_tr Sugar (and other) transporter -33.6 4.4e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF1228 1/1 196 271 .. 1 87 [] -19.0 0.094 MFS_1 1/1 183 719 .. 1 396 [] 121.7 1.4e-32 Sugar_tr 1/1 177 752 .] 1 488 [] -33.6 4.4e-05 Alignments of top-scoring domains: DUF1228: domain 1 of 1, from 196 to 271: score -19.0, E = 0.094 *->avAMGiGRFaYTPiLPvMmaegqfSlsdAGliAsaNYlGYLvGALlA +v+ +LP +++ s G+++s+ YlG vGA++ mKIAA1054 196 VVGF---------VLPSAETDLCIPNSGSGWLGSIVYLGMMVGAFFW 233 sfgwahvpgreRrvllgGLlatvlLllamaltsgfaavsL<-* + ++ v++ ll+ + + + +++++++g +++ mKIAA1054 234 GGLADKVGRK--QSLLICMSVNGFFAFLSSFVQGYGFFLV 271 MFS_1: domain 1 of 1, from 183 to 719: score 121.7, E = 1.4e-32 *->lflatflaglgrsllgpalpylassleesslgqtdtlspteigllls l +a ++ g +++g++lp ++ l + + g+l s mKIAA1054 183 LGMALMADGVEVFVVGFVLPSAE---TD--LC----IPNSGSGWLGS 220 afslgyalaqplaGrlsDrfGrrvyirlkpvlllglllfalgslllafas + +lg+ ++++++G l+D++Gr+ ll+++ + +++++l+ f+ mKIAA1054 221 IVYLGMMVGAFFWGGLADKVGRK---Q---SLLICMSVNGFFAFLSSFVQ 264 stslwlllilrallqGlgggllapaaaaliadwfppeergralgivsagf ++ ++l+ r+l +G+g g+++p++ +++a+++ +e+rg l+++ +++ mKIAA1054 265 --GYGFFLVCRLL-SGFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFW 311 glGaalggpllggllaalgwwgssgt.....fWraaFlilgilallaall +G++ +++++ +++ ++gw +s g + + Wr ++ ++ ++ ++++ mKIAA1054 312 MIGGIYASAMAWAIIPHYGWSFSMGSayqfhSWRVFVIVCALPCVSSVVA 361 llvlfllpeppakksakpeeeeali......................... l + pe+p+ ++++ ea + +++ + ++++++ + ++ mKIAA1054 362 ---LTFMPESPRFLLEVGKHDEAWMilklihdtnmrargqpekvftvnki 408 .................................................. +++++ ++ + +++++++ ++ + +++ + + + + + + ++++ mKIAA1054 409 ktpkqidelieiesdtgtwyrrcfvrirtelygiwltfmrcfnypvrent 458 .................................................. + + + + + + + + + ++ + ++++ +++ ++++ + + mKIAA1054 459 ikltivwftlsfgyyglsvwfpdvikhlqsdeyalltrnvqkdkyanfsi 508 .................................................. + + +++ ++ + ++++ + + ++ + +++ ++ + ++ ++ ++ + mKIAA1054 509 nftmenqihtgmeyengrflgvkfksvtfkdsvfksctfddvtsvntyfk 558 .............plr.lll.p.lllillalflllaaflalltflplyll + + ++ +++++ + +++ ++ ++l+ mKIAA1054 559 nctfidtlfdntdFEPyKFIdSeF-------------------QNCSFLH 589 lpllls.saglslsalaagllllalglggllgglllggrlsdrlgrglar + + ++ +sa ++ ++ +lg +++l g ++++ l+dr+g mKIAA1054 590 NKTGCQiTFDDDYSAYWIYFVN-FLGTLAVLPGNIVSALLMDRIG----- 633 kgeaeaerrrllllgllllalgllllafapslsalllvallllGlgfggv r ++l +++l ++++++l+f++s s +++ l+l+ + + mKIAA1054 634 -------RLTMLGGSMVLSGISCFFLWFGTSES-MMIGMLCLYNGLTISA 675 fpalnalasdlappeaqerGtasGlyntagslggalgpllgGllld<-* + +l +++++l+p + +r+t++G++n++ +++lg l++G l+ mKIAA1054 676 WNSLDVVTVELYPTD--RRATGFGFLNALCKAAAVLGNLIFGSLVS 719 Sugar_tr: domain 1 of 1, from 177 to 752: score -33.6, E = 4.4e-05 *->valvaalgGgflfGYDtgvigafltliaflkrfglltssgaleelvg +al+ +lg ++ g +++ + ++ + + mKIAA1054 177 WALFFVLGM------ALMADGVEVFVVG---FVLPSAETDLCI---- 210 ystvltglvvsiffvGcliGslfaGwlgdrfGRkksllialvlfviGall ++ +g+ si+ +G+++G++f G l+d+ GRk slli+ + a+l mKIAA1054 211 -PNSGSGWLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFL 259 maaapgktTiGgwavyllivGRvlvGlgvGgisvlvPmYisEiAPkklRG + + +++ ++v+R+l+G+g+Gg++ +v Y +E+ ++RG mKIAA1054 260 SSFVQ--------GYGFFLVCRLLSGFGIGGAIPTVFSYFAEVLAREKRG 301 algslyqlgitiGilvAaiiglglnktnndaal.......nswgWRiplg s+ +++ iG++ A + ++++ ++ ++ + ++ WR+ ++ mKIAA1054 302 EHLSWLCMFWMIGGIYASAMAWAIIPHYG--WSfsmgsayQFHSWRVFVI 349 lqavpalllligllflPESPRwLvekgkleeAravLaklrgv........ ++a+p + ++l+f PESPR+L+e+gk++eA +L+ + +++ + ++++ mKIAA1054 350 VCALPCVSSVVALTFMPESPRFLLEVGKHDEAWMILKLIHDTnmrargqp 399 ..........................edvdqeiqeekaeleatveeekag ++ + ++ +++++ ++ + +++++ +++++ +++el mKIAA1054 400 ekvftvnkiktpkqidelieiesdtgTWYRRCFVRIRTELYGI------- 442 kaswleLfrgrtrpkyrqrllmgvmlqifqQltGiNaifyYsptifks.. wl+++r + p + ++ +++ +f+ G++ + ++ p + k + mKIAA1054 443 ---WLTFMRCFNYP--VRENTIKLTIVWFTLSFGYYGLSVWFPDVIKHlq 487 .................................................. +++ +++ ++++ + + + + +++ +++ + ++++ + + ++ + mKIAA1054 488 sdeyalltrnvqkdkyanfsinftmenqihtgmeyengrflgvkfksvtf 537 .................................................. +++ ++ + ++ ++ ++ ++ + ++ ++++ ++ + +++ ++ + mKIAA1054 538 kdsvfksctfddvtsvntyfknctfidtlfdntdfepykfidsefqncsf 587 ........aGvsdsrasllvtiivgvvNfvfTlvali.......flvdrf +++++ ++ ++d+ + ++ vNf+ Tl ++++ + +l+dr+ mKIAA1054 588 lhnktgcqITFDDD----YSAYWIYFVNFLGTLAV-LpgnivsaLLMDRI 632 GRRpllllGaagmaicflilgasvivallllskskdpsskgagivaivfi GR ++l +++ i +++l+ + +s+ +i ++ mKIAA1054 633 GRLTMLGGSMVLSGISCFFLW-----FGTSESM------------MIGML 665 llfiafFalgwGpvpwvivsElFPlgvRskamalataanwlanfiigflf +l+ + w+ + v++ El+P+ R++++++ a+ a ++ +++f mKIAA1054 666 CLYNGLTISAWNSLD-VVTVELYPTDRRATGFGFLNALCKAAAVLGNLIF 714 pyitgaiglflggyvflvfagllvlfilfvfffvPETkGrtLeeieelf< ++ + + + ++ a +++++ +v++ +P T+ ++l mKIAA1054 715 GSLVSITK-----AIPILLASTVLVCGGLVGLRLPDTRT------QVLM 752 -* mKIAA1054 - - //