hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp04321/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1051  ( 549 res)   mbp04321

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
Retrotrans_gag Retrotransposon gag protein               93.5    4.3e-24   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Retrotrans_gag   1/1     264   357 ..     1   100 []    93.5  4.3e-24

Alignments of top-scoring domains:
Retrotrans_gag: domain 1 of 1, from 264 to 357: score 93.5, E = 4.3e-24
                   *->klavtfLeGrAltWwkslvarsidaidsWdelkdaFlkrFvpsavkd
                      +++++ L GrA+ W+++ ++r+++ ++++ +++++++ +F+++++++
   mKIAA1051   264    CFVTSMLIGRAARWATAKLQRCTYLMHNYTAFMMELKHVFEDPQRRE 310  

                   qleseLrqlrQkgtesvreYverFkrlarqapheggvrteealisaFlrG
                   ++++++r+lrQ g ++v +Y   F+ +a++++     +te+al++ F +G
   mKIAA1051   311 AAKRKIRRLRQ-GPGPVVDYSNAFQMIAQDLD-----WTEPALMDQFQEG 354  

                   Lre<-*
                   L++   
   mKIAA1051   355 LNP    357  

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