hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07836/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1049  ( 500 res)   mbg07836

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF654   Protein of unknown function, DUF654            665.9   2.1e-196   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF654     1/1     113   499 ..     1   510 []   665.9 2.1e-196

Alignments of top-scoring domains:
DUF654: domain 1 of 1, from 113 to 499: score 665.9, E = 2.1e-196
                   *->teeskdwqsfFafthSnaYqPLNSDLSKKqaQrmFlaavermdpVqn
                      + esk++ sfFaf h+++Yq         qaQ++Fl+ave+m+p  n
   mKIAA1049   113    L-ESKKGLSFFAFDHNEEYQ---------QAQHKFLVAVESMEP--N 147  

                   nvieLlSrktPYHidsLLQvaeifkmqGDfelAaeLleRALYvldralhp
                   n+++Ll +++PYH+dsLLQ+++++++q+D+e+A++L+eRALY++++a+hp
   mKIAA1049   148 NIVVLL-QTSPYHVDSLLQLSDACRFQEDQEMARDLIERALYSMECAFHP 196  

                   nFslfsgncRqLdYrrpeNRlFYlvLfRhmqsLakRGCwRTAfEvcKlLL
                   +Fsl+sg cR LdYrrpeNR+FYl+L+++m++L+kRGC+RTA+E+cKl+L
   mKIAA1049   197 LFSLTSGTCR-LDYRRPENRSFYLTLYKQMSFLEKRGCPRTALEYCKLIL 245  

                   SLdPdeDPlgmllliDyyALRakeYaWLiefseeaenVRAARRqPRRGAA
                   SL+PdeDPl+mllliD++ALRa++Y++Li++++e+e+             
   mKIAA1049   246 SLEPDEDPLCMLLLIDHLALRARNYEYLIRLFQEWEA------------- 282  

                   AESEEADVKEALAAAGLTLRDAALanklsqlPNfaYSlALArfflekeee
                                           +++lsqlPNfa+S++LA+f+l+++++
   mKIAA1049   283 ------------------------HRNLSQLPNFAFSVPLAYFLLSQQTD 308  

                   dreSeevsrdasrqsKVLRGLTAAqRASLAATPsArnlLlaAlkrfPgvL
                    +e e    +++rq                    A+ l+++Al++fPgvL
   mKIAA1049   309 LPEHE---LSSARQQ-------------------ASLLIQQALTMFPGVL 336  

                   seLldelsGVDVVCGTEGATLSisddasVlqlkflqAGtsdvsisqapal
                    +Ll+ +s              +++da V++++f+   ++d++isq+pal
   mKIAA1049   337 MPLLEYCS--------------VRPDATVSNHRFF---GPDAEISQPPAL 369  

                   nlLvklYvkRaellWklpevlsfLesavrkvlqsletgepevdsgDGsee
                    +Lv lY++R+++lWk+p+ +s+Le++v++vlq++++g+p+v        
   mKIAA1049   370 GQLVSLYLGRSHFLWKEPAIMSWLEENVHEVLQAVDAGDPAV-------- 411  

                   eeweekRsilysgtsprNilRhviLseisskvpAiLppdvlqneVmefDp
                   e++e++R++ly+ ++prNi+RhviLsei+++v+ +Lp dv++++Vm+fDp
   mKIAA1049   412 EACENRRKVLYQ-RAPRNIHRHVILSEIKEAVA-ALPSDVTTQSVMGFDP 459  

                   LPPdntlegysresrelseriksdlnekslfvqrveslldenlltqgeqe
                   LPP +t+++y+r++r ++   +++     lf+++++++            
   mKIAA1049   460 LPPLDTIYSYVRPERLSPVSHGNT---IALFFRSLLPN------------ 494  

                   plgqalheveeea<-*
                             +e+   
   mKIAA1049   495 --------YTTEV    499  

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