hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01522/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1044  ( 636 res)   mbg01522

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        62.3    6.2e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      47   146 ..     1   114 []    62.3  6.2e-14

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 47 to 146: score 62.3, E = 6.2e-14
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                        ++l+v+g         ++f++  +  +L ++   ++++++  e +
   mKIAA1044    47    ALIVLNVSG---------TRFQT--WQDTLERY---PDTLLGSSERd 79   

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                      +++++ +++D      ++p++Fr++Lnf++t+kl+ p+   e++  +
   mKIAA1044    80 ffyhpetqQYFFD------RDPDIFRHILNFYRTgKLHYPRH--ECISAY 121  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                    e+  f+   G ip+++  C++  +k+    
   mKIAA1044   122 DEELAFF---GLIPeIIGDCCYEEYKDR    146  

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