hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01522/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1044  ( 636 res)   mbg01522

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
K_tetra     K+ channel tetramerisation domain           162.1    9.4e-45   1
Ion_trans   Ion transport protein                       156.3    5.3e-43   1
Ion_trans_2 Ion channel                                  61.7    1.6e-14   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
K_tetra       1/1      49   138 ..     1   102 []   162.1  9.4e-45
Ion_trans     1/1     234   411 ..     1   228 []   156.3  5.3e-43
Ion_trans_2   1/1     336   417 ..     1    81 []    61.7  1.6e-14

Alignments of top-scoring domains:
K_tetra: domain 1 of 1, from 49 to 138: score 162.1, E = 9.4e-45
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      ++LNV+G+rF+T+++TL+r+ PdTlLg+ ++           +fy +
   mKIAA1044    49    IVLNVSGTRFQTWQDTLERY-PDTLLGSSER----------DFFYHP 84   

                   dtnEyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFyglde
                   +t+ yFFDR+P++F++ILnfYRt  GkLh+p+++c+ +++eEl+F+gl +
   mKIAA1044    85 ETQQYFFDRDPDIFRHILNFYRT--GKLHYPrHECISAYDEELAFFGLIP 132  

                   laielC<-*
                   ++i++C   
   mKIAA1044   133 EIIGDC    138  

Ion_trans: domain 1 of 1, from 234 to 411: score 156.3, E = 5.3e-43
                   *->ileildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDfl
                      ++++ld+++++iFt+E+ll++ a++ +      ++++rs + i+D++
   mKIAA1044   234    AFFCLDTACVMIFTVEYLLRLAAAPSR------YRFVRSVMSIIDVV 274  

                   vvlpslislilsllgggsegdlyvreskfsttpegsygllsvlrllRllR
                   ++lp++i+l+++  +                      ++ +++ +lR++R
   mKIAA1044   275 AILPYYIGLVMTDNE----------------------DVSGAFVTLRVFR 302  

                   vLRllrlirrapglfRWelrtlGWelnslg.rslksllnvllllllllfi
                      ++r++++++      ++++   l++lg +   +  ++++ll+ l ++
   mKIAA1044   303 ---VFRIFKFSR------HSQG---LRILGyTLKSCASELGFLLFSLTMA 340  

                   faiigvqlFggelnkccnpingntnFdsfgnallwlFqtmTteGwgdvmp
                   + i++  +F++e+  +       + F+s++ a++ +++tmTt G+gd++p
   mKIAA1044   341 IIIFATVMFYAEKGSS------ASKFTSIPAAFWYTIVTMTTLGYGDMVP 384  

                   dtlagtvlgkiyfvsfiilggflllNLfiavi<-*
                   +    t+ gki++ s + l+g+l+++L+++vi   
   mKIAA1044   385 K----TIAGKIFG-SICSLSGVLVIALPVPVI    411  

Ion_trans_2: domain 1 of 1, from 336 to 417: score 61.7, E = 1.6e-14
                   *->illllvlifgtvyyalepeeg.we.wsfldalYFsfvTlTTiGYGDi
                       l+ +++if+tv+++ e +++     s   a+++++vT+TT GYGD+
   mKIAA1044   336    SLTMAIIIFATVMFYAEKGSSaSKfTSIPAAFWYTIVTMTTLGYGDM 382  

                   vPlstdaGRlftivyiliGiplfllllavlgrflte<-*
                   vP+ t+aG++f  +  l G+ +++l + v+++ +++   
   mKIAA1044   383 VPK-TIAGKIFGSICSLSGVLVIALPVPVIVSNFSR    417  

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