hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05088/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1043  ( 1627 res)   mbg05088

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR      Tetratricopeptide repeats                      166.4    2.9e-45   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR        1/9       9    42 ..     1    34 []    27.3   0.0021
TPR        2/9      49    82 ..     1    34 []    13.4       15
TPR        3/9      92   125 ..     1    34 []    34.5  1.4e-05
TPR        4/9     132   165 ..     1    34 []    18.3      1.1
TPR        5/9     172   205 ..     1    34 []    30.3  0.00026
TPR        6/9     212   245 ..     1    34 []    17.6      1.8
TPR        7/9     252   285 ..     1    34 []    14.5       11
TPR        8/9     292   325 ..     1    34 []    22.0    0.083
TPR        9/9     332   365 ..     1    34 []     8.9       49

Alignments of top-scoring domains:
TPR: domain 1 of 9, from 9 to 42: score 27.3, E = 0.0021
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       +a+  l+ +y++lg+y +A ++y++ Lel ++    
   mKIAA1043     9    CRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKL    42   

TPR: domain 2 of 9, from 49 to 82: score 13.4, E = 15
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+++ n+G   ++++  ++Ai y+e+ L++  +    
   mKIAA1043    49    AQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQL    82   

TPR: domain 3 of 9, from 92 to 125: score 34.5, E = 1.4e-05
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       +a+ nlG +y++lgdy+eAi+yye+ L+++ +    
   mKIAA1043    92    GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSL    125  

TPR: domain 4 of 9, from 132 to 165: score 18.3, E = 1.1
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+a+  lGn +++ g +++A+ ++ek L ++ +    
   mKIAA1043   132    AKAYRGLGNGHRATGSLQQALVCFEKRLVVAHEL    165  

TPR: domain 5 of 9, from 172 to 205: score 30.3, E = 0.00026
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+a+  lG ++ +lg+y++Ai ++e+ L ++++    
   mKIAA1043   172    AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM    205  

TPR: domain 6 of 9, from 212 to 245: score 17.6, E = 1.8
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ++a + lG +y ++g+yd A++y +  L+++++    
   mKIAA1043   212    SDAACGLGGVYQQMGEYDTALQYHQLDLQIAEET    245  

TPR: domain 7 of 9, from 252 to 285: score 14.5, E = 11
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       +a+ nlG+ y++lg ++ A+ y e+ L+++ +    
   mKIAA1043   252    GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQM    285  

TPR: domain 8 of 9, from 292 to 325: score 22.0, E = 0.083
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                         ++ lG  +++l +y +A+ y+++ L+l+++    
   mKIAA1043   292    TVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL    325  

TPR: domain 9 of 9, from 332 to 365: score 8.9, E = 49
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a++   lG+++ + g+++eA   + +A +l ++    
   mKIAA1043   332    AKIRHGLGLSLWASGNLEEAQHQLYRASALFETI    365  

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