hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg05088/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1043 ( 1627 res) mbg05088 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TPR_1 Tetratricopeptide repeat 143.7 3.2e-39 9 TPR_2 Tetratricopeptide repeat 103.0 5.6e-27 8 TPR_4 Tetratricopeptide repeat 46.6 5.5e-10 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TPR_2 1/8 9 42 .. 1 34 [] 17.0 0.45 TPR_1 1/9 9 42 .. 1 34 [] 20.7 0.034 TPR_1 2/9 49 82 .. 1 34 [] 6.7 5.6 TPR_4 1/5 92 117 .. 1 26 [] 9.4 9.2 TPR_2 2/8 92 125 .. 1 34 [] 33.4 5.3e-06 TPR_1 3/9 92 125 .. 1 34 [] 37.5 3e-07 TPR_4 2/5 132 157 .. 1 26 [] 5.6 32 TPR_2 3/8 132 165 .. 1 34 [] 12.6 7.3 TPR_1 4/9 132 165 .. 1 34 [] 14.4 0.69 TPR_4 3/5 172 197 .. 1 26 [] 13.8 2.3 TPR_1 5/9 172 205 .. 1 34 [] 26.0 0.00089 TPR_2 4/8 172 205 .. 1 34 [] 20.2 0.048 TPR_1 6/9 212 245 .. 1 34 [] 13.7 0.83 TPR_2 5/8 212 245 .. 1 34 [] 11.7 9.3 TPR_2 6/8 252 285 .. 1 34 [] 5.4 50 TPR_1 7/9 252 285 .. 1 34 [] 13.9 0.79 TPR_2 7/8 292 325 .. 1 34 [] 12.9 6.8 TPR_1 8/9 292 325 .. 1 34 [] 18.8 0.13 TPR_4 4/5 332 357 .. 1 26 [] 11.3 5.1 TPR_2 8/8 332 365 .. 1 34 [] 11.7 9.5 TPR_1 9/9 332 365 .. 1 34 [] 7.2 4.9 TPR_4 5/5 384 409 .. 1 26 [] 8.9 11 Alignments of top-scoring domains: TPR_2: domain 1 of 8, from 9 to 42: score 17.0, E = 0.45 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +a+ l+ +y++lg+y A ++y++ lel + mKIAA1043 9 CRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKL 42 TPR_1: domain 1 of 9, from 9 to 42: score 20.7, E = 0.034 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +a+ l+++y++lgky A ++y++ Lel ++ mKIAA1043 9 CRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKL 42 TPR_1: domain 2 of 9, from 49 to 82: score 6.7, E = 5.6 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a++y n+G + ++++ ++Ai ++e+ L++ + mKIAA1043 49 AQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQL 82 TPR_4: domain 1 of 5, from 92 to 117: score 9.4, E = 9.2 *->arallaLArallalGdlaeArallrr<-* +ra +L+ + alGd++eA ++ mKIAA1043 92 GRAYGNLGDCYEALGDYEEAIKYYEQ 117 TPR_2: domain 2 of 8, from 92 to 125: score 33.4, E = 5.3e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +a+ nlG++y++lgdyeeA+++ye+ l+ + + mKIAA1043 92 GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSL 125 TPR_1: domain 3 of 9, from 92 to 125: score 37.5, E = 3e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +ay nlG +y++lg+y+eAi++ye+ L++ + mKIAA1043 92 GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSL 125 TPR_4: domain 2 of 5, from 132 to 157: score 5.6, E = 32 *->arallaLArallalGdlaeArallrr<-* a a ++L+ + a G l +A+ +++ mKIAA1043 132 AKAYRGLGNGHRATGSLQQALVCFEK 157 TPR_2: domain 3 of 8, from 132 to 165: score 12.6, E = 7.3 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+a++ lG+ +++ g +++Al ++ek l + + mKIAA1043 132 AKAYRGLGNGHRATGSLQQALVCFEKRLVVAHEL 165 TPR_1: domain 4 of 9, from 132 to 165: score 14.4, E = 0.69 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ay lGn +++ g +++A+ ++ek L + + mKIAA1043 132 AKAYRGLGNGHRATGSLQQALVCFEKRLVVAHEL 165 TPR_4: domain 3 of 5, from 172 to 197: score 13.8, E = 2.3 *->arallaLArallalGdlaeArallrr<-* a+a L+ ++ +lG++++A l+r mKIAA1043 172 AQAYGELGSLHSQLGNYEQAISCLER 197 TPR_1: domain 5 of 9, from 172 to 205: score 26.0, E = 0.00089 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ay lG ++ +lg+y++Ai ++e+ L + ++ mKIAA1043 172 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 205 TPR_2: domain 4 of 8, from 172 to 205: score 20.2, E = 0.048 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a a+ lG ++ +lg+ye+A+ ++e+ l ++ + mKIAA1043 172 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 205 TPR_1: domain 6 of 9, from 212 to 245: score 13.7, E = 0.83 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++a + lG +y ++g+yd A+++ + L++ ++ mKIAA1043 212 SDAACGLGGVYQQMGEYDTALQYHQLDLQIAEET 245 TPR_2: domain 5 of 8, from 212 to 245: score 11.7, E = 9.3 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +a + lG +y ++g+y+ Al++ + l+++++ mKIAA1043 212 SDAACGLGGVYQQMGEYDTALQYHQLDLQIAEET 245 TPR_2: domain 6 of 8, from 252 to 285: score 5.4, E = 50 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +a+ nlGl y+ lg +e+A+ + e+ l+++ + mKIAA1043 252 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQM 285 TPR_1: domain 7 of 9, from 252 to 285: score 13.9, E = 0.79 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +ay nlG++y++lg ++ A+ + e+ L++ + mKIAA1043 252 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQM 285 TPR_2: domain 7 of 8, from 292 to 325: score 12.9, E = 6.8 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* + lG+ + +l++y +A+ ++++ l+l+++ mKIAA1043 292 TVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL 325 TPR_1: domain 8 of 9, from 292 to 325: score 18.8, E = 0.13 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* y lG ++++l++y +A+ ++++ L+l ++ mKIAA1043 292 TVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL 325 TPR_4: domain 4 of 5, from 332 to 357: score 11.3, E = 5.1 *->arallaLArallalGdlaeArallrr<-* a +++L+ l+a G+l+eA+ l r mKIAA1043 332 AKIRHGLGLSLWASGNLEEAQHQLYR 357 TPR_2: domain 8 of 8, from 332 to 365: score 11.7, E = 9.5 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a++ + lGl++++ g++eeA + + +A +l+++ mKIAA1043 332 AKIRHGLGLSLWASGNLEEAQHQLYRASALFETI 365 TPR_1: domain 9 of 9, from 332 to 365: score 7.2, E = 4.9 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a++ lG+ + + g+++eA + +A +l ++ mKIAA1043 332 AKIRHGLGLSLWASGNLEEAQHQLYRASALFETI 365 TPR_4: domain 5 of 5, from 384 to 409: score 8.9, E = 11 *->arallaLArallalGdlaeArallrr<-* aL r+l lG ++eA+a+++r mKIAA1043 384 TSSYQALQRVLVSLGHHDEALAVAER 409 //