hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06245/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1042  ( 1016 res)   mbg06245

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HAP1_N   HAP1 N-terminal conserved region               694.6   4.8e-205   1
Filament Intermediate filament protein                 -190.2       0.67   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HAP1_N     1/1     124   431 ..     1   336 []   694.6 4.8e-205
Filament   1/1     176   467 ..     1   359 []  -190.2     0.67

Alignments of top-scoring domains:
HAP1_N: domain 1 of 1, from 124 to 431: score 694.6, E = 4.8e-205
                   *->leeqlpkYklradtlyfmigyanedWsdpaaplsrppavsglspeqt
                      leeqlp+Yklradt+y   gy+++dW+++  pl++p+a+++l++eq+
   mKIAA1042   124    LEEQLPHYKLRADTIY---GYDHDDWLHT--PLISPDANIDLTTEQI 165  

                   retlkYflLCanRVsqmtktydDIdavtrLLEEKerDLELAArIGQsLLk
                   +etlkYflLCa+RV+qmtkty+DIdavtrLLEEKerDLELAArIGQsLLk
   mKIAA1042   166 EETLKYFLLCAERVGQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLK 215  

                   qNkvLeerNekLEeqLgkarDeivQLrHELnkkdELLrvySdadDDgEdE
                   +Nk+L+erNe+LEeq++++r+e++QLrHEL++kdELL++y++a++++E+ 
   mKIAA1042   216 KNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEP- 264  

                   EDEEEEEGEEEEResqcstplkhnesysapKPPtkaeTlqkslqLEaLqe
                                es+cstplk+nes+s         ++q++++L++Lq+
   mKIAA1042   265 -------------ESVCSTPLKRNESSS---------SVQNYFHLDSLQK 292  

                   KLKsLeeENerLRsEAsqLktETityEeKEqqLvldcVkqLreANdQmas
                   KLK+LeeEN++LRsEA+qLktETityEeKEqqLv+dcVk+Lr+AN+Q+as
   mKIAA1042   293 KLKDLEEENVVLRSEACQLKTETITYEEKEQQLVNDCVKELRDANVQIAS 342  

                   LseeLekkteelerQqEeitkLlaeiadlqkklkslsvekEElqqhLaae
                   +seeL+kkte+++rQqEeit+Ll++i+dlqkk+ks++ve+EEl+qhL+a+
   mKIAA1042   343 ISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKSCAVENEELVQHLGAA 392  

                   KdaqrqltaElkElqDryaEclamlhEaQeelKklRsrS<-*
                   KdaqrqltaEl+El+D+yaEc++mlhEaQeelK+lR+++   
   mKIAA1042   393 KDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKT    431  

Filament: domain 1 of 1, from 176 to 467: score -190.2, E = 0.67
                   *->nEKe.qm.QnLNDRLAsYIdKV.RfLEqqNkeLe..vkieelrqkqs
                       E+ +qm++++ND     Id V+R LE+  ++Le  ++i +   k+ 
   mKIAA1042   176    AERVgQMtKTYND-----IDAVtRLLEEKERDLElaARIGQSLLKKN 217  

                   rggpasvsrlyslYeteieeLRrqidqltnerarlqlEidnlrealedfr
                   +     ++   +l e++ e  R+++ ql +e         +++++l +f 
   mKIAA1042   218 K----TLTERNELLEEQVEHIREEVSQLRHEL--------SMKDELLQFY 255  

                   kKyedKeDLaaQnqlkdlEialntkeaeLaTaLeRqeaEndlvgLRaQiA
                   +   +             E++    e  ++T L R e    ++ +     
   mKIAA1042   256 TSAAE-------------ESEP---ESVCSTPLKRNESSSSVQNY----- 284  

                   klEslaaRkdlDeaTLarvD.LEnkvEsLqEElaFLKknHeEEvkeLqaq
                                    ++D+L++k+  L+EE   L+       +e    
   mKIAA1042   285 ----------------FHLDsLQKKLKDLEEENVVLR-------SEACQL 311  

                   iqdtgqvnVEmDaarqqEwklDLtkaLrEiRaQYEeiAeknrqeaEewYk
                     +t  ++ E  +          + +++E+R+                 +
   mKIAA1042   312 KTET--ITYEEKE------QQLVNDCVKELRDA----------------N 337  

                   sKleeLqtaaarngealrsaKeEitElRRqi..............QsLei
                    +++ ++++ a+ +e++ +++eEit l  qi + +++ ++   ++++L  
   mKIAA1042   338 VQIASISEELAKKTEDAARQQEEITHLLSQIvdlqkkakscavenEELVQ 387  

                   ELqslksqnasLErqlaElEeryeaelaqyqalisqlEeeLqqlreEMar
                   +L + k    +L ++l+ElE+ y++ +    +++++ +eeL +lr+    
   mKIAA1042   388 HLGAAKDAQRQLTAELRELEDKYAECM----EMLHEAQEELKNLRNKTMP 433  

                   qLrEYQeL....LdVKlaLDiEIA.TYRKLLEGEEsR<-*
                     r Y+ L+  ++d    L +EI++T RK L  EE     
   mKIAA1042   434 TSRRYHSLglfpMD---SLAAEIEgTMRKELQLEELE    467  

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