hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00916/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1034  ( 727 res)   mpf00916

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HOX      Homeodomain                                     40.1      3e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HOX        1/1     608   671 ..     1    63 []    40.1    3e-07

Alignments of top-scoring domains:
HOX: domain 1 of 1, from 608 to 671: score 40.1, E = 3e-07
                   *->krrkRtsftpeQleeLEkeFeknp.YPsreereeLAkeLgLterqVk
                      k+r+Rt ++ e+l +L+ + ++   YP+ e +  L+++L L++  + 
   mKIAA1034   608    KPRSRTKISLEALGILQSFIHDVGlYPDQEAIHTLSAQLDLPKHTII 654  

                   vWFQNRRakwkrqekkk<-*
                     FQN+R+  k++ k k   
   mKIAA1034   655 KFFQNQRYHVKHHGKLK    671  

//