hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00916/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1034  ( 727 res)   mpf00916

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CUT      CUT domain                                     238.6    8.8e-68   2
Homeobox Homeobox domain                                 20.6    1.4e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CUT        1/2     344   431 ..     1    88 []   129.8    5e-35
CUT        2/2     467   554 ..     1    88 []   109.7  5.4e-29
Homeobox   1/1     609   666 ..     1    57 []    20.6  1.4e-05

Alignments of top-scoring domains:
CUT: domain 1 of 2, from 344 to 431: score 129.8, E = 5e-35
                   *->nqqigmneelDTaeIarrvkeeLkrhnIgQriFAekvLGlSQGslSd
                        ++ ++  +++ +I+++v++eLkr++++Q++FA+++++++QG+lS+
   mKIAA1034   344    KPEPTNSSVEVSPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSE 390  

                   LLrkPKPWskLtqkGREpFrRMqnWLsdpnavrdlilqqek<-*
                   +Lrk++++ +++q++++++r+Mqn+L++p+ +rd+i+q+e+   
   mKIAA1034   391 ILRKEEDPRTASQSLLVNLRAMQNFLNLPEVERDRIYQDER    431  

CUT: domain 2 of 2, from 467 to 554: score 109.7, E = 5.4e-29
                   *->nqqigmneelDTaeIarrvkeeLkrhnIgQriFAekvLGlSQGslSd
                        +++  + ++Ta I++++++e+kr++++Q++FA++++++SQG+l++
   mKIAA1034   467    PIKVDGANVNITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCE 513  

                   LLrkPKPWskLtqkGREpFrRMqnWLsdpnavrdlilqqek<-*
                   LLr+++ +s+++++++E++  ++++L++p+ +rd i++ e+   
   mKIAA1034   514 LLRWKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEES    554  

Homeobox: domain 1 of 1, from 609 to 666: score 20.6, E = 1.4e-05
                   *->rrkRTtftpeQleeLEkeFqk.nrYPsreeReeLAkkLgLterqVkv
                       r+RT ++ e l +L+ + +    YP+ e++  L+++L+L++  +  
   mKIAA1034   609    PRSRTKISLEALGILQSFIHDvGLYPDQEAIHTLSAQLDLPKHTIIK 655  

                   WFQNRRaKwKk<-*
                    FQN R+  K    
   mKIAA1034   656 FFQNQRYHVKH    666  

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