hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00453/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1031  ( 698 res)   mpg00453

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR_1    Tetratricopeptide repeat                        40.4    4.1e-08   2
TPR_2    Tetratricopeptide repeat                        29.8    6.5e-05   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR_2      1/3      75   108 ..     1    34 []    10.4       13
TPR_1      1/2     121   154 ..     1    34 []    28.9  0.00012
TPR_2      2/3     121   154 ..     1    34 []    19.0     0.11
TPR_1      2/2     155   188 ..     1    34 []    12.0      1.3
TPR_2      3/3     155   188 ..     1    34 []     6.1       42

Alignments of top-scoring domains:
TPR_2: domain 1 of 3, from 75 to 108: score 10.4, E = 13
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      +  l++ G+ +++ +dy++Al  y + l  +  +   
   mKIAA1031    75    VQNLFAEGNDLFREKDYKQALVQYMEGLNVADYA    108  

TPR_1: domain 1 of 2, from 121 to 154: score 28.9, E = 0.00012
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       + + n++++y+ +g y++A+e+ ekAL ld +    
   mKIAA1031   121    CKLHVNRAACYFTMGLYEKALEDSEKALGLDGES    154  

TPR_2: domain 2 of 3, from 121 to 154: score 19.0, E = 0.11
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       +++ n++ +y+ +g ye+Ale+ ekAl ld +    
   mKIAA1031   121    CKLHVNRAACYFTMGLYEKALEDSEKALGLDGES    154  

TPR_1: domain 2 of 2, from 155 to 188: score 12.0, E = 1.3
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       +a+++++ a+ +lg+++eA e+  ++    P++   
   mKIAA1031   155    IRALFRKARALNELGRHKEAYECSSRCSLALPHD    188  

TPR_2: domain 3 of 3, from 155 to 188: score 6.1, E = 42
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       +al++ ++a+ +lg+++eA e+  ++    P++   
   mKIAA1031   155    IRALFRKARALNELGRHKEAYECSSRCSLALPHD    188  

//