hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp07290/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1030  ( 753 res)   mbp07290

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
fn3      Fibronectin type III domain                     19.9      0.018   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
fn3        1/1      40   123 ..     1    84 []    19.9    0.018

Alignments of top-scoring domains:
fn3: domain 1 of 1, from 40 to 123: score 19.9, E = 0.018
                   *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpknggew
                        +P+ lt+   t   + lsW pp +++ pi++Y  + R    g+ w
   mKIAA1030    40    VTPPRCLTANR-TQQGVLLSWLPPAnHSFPIDRYIMEFR---VGERW 82   

                   nelt..vpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                     l++ +pgt   +  ++L  +t Ye+rV Av ++  +++S   
   mKIAA1030    83 EMLDdaIPGTDGDFFAKDLSQDTWYEFRVLAVMQDLiSEPS    123  

//