hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg03568/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1028 ( 546 res) mbg03568 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- S_TKc Serine/Threonine protein kinases, catalytic 289.4 2.7e-82 1 TyrKc Tyrosine kinase, catalytic domain -43.4 1.9e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TyrKc 1/1 66 378 .. 1 280 [] -43.4 1.9e-08 S_TKc 1/1 66 380 .. 1 231 [] 289.4 2.7e-82 Alignments of top-scoring domains: TyrKc: domain 1 of 1, from 66 to 378: score -43.4, E = 1.9e-08 *->ltlgkkLGeGaFGeVykGtlk.....ieVAVKtLkeda.keeFlrEa g k G+G +G Vyk++ k+++++ e A K + + +rE+ mKIAA1028 66 EYEGCKVGRGTYGHVYKARRKdgkdeKEYALKQIEGTGiSMSACREI 112 kiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLr ++++l kHpN+++L v +++ ++ +++++ y+e+ dL + ++ mKIAA1028 113 ALLREL--KHPNVIALQKVFLSH-----SDRKVWLLFDYAEH-DLWHIIK 154 knrpk........lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLv +r + ++++ +l+ s s +QI +G YL+ + + HRDL N+Lv mKIAA1028 155 FHRASkankkpmqLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILV 204 genk....vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirW +++++++vKI+D G +R + + + + + ++ W mKIAA1028 205 MGEGpergRVKIADMGFARLFNSP--------LKPLA---DLDPVVVTFW 243 m.APEsl.kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneev ++APE l + +t + D+W+ G E++t + +++ mKIAA1028 244 YrAPELLlGARHYTKAIDIWAIGCIFAELLTSEPIFHCR-----QEDIKT 288 leylkkGyRlpkPendlpiS.............................. + + ++ + + +++ ++ ++ ++ ++ +++ ++++ + mKIAA1028 289 SNPFHHDQLDRIFSV---MGfpadkdwedirkmpeyptlqkdfrrttyan 335 .........s.vtCPdelYdlMlqCWaedPedRPtFselverl<-* ++ + ++ +v ++++ l ++ dP +R t ++ ++ mKIAA1028 336 sslikymekHkVKPDSKVFLLLQKLLTMDPTKRITSEQALQDP 378 S_TKc: domain 1 of 1, from 66 to 380: score 289.4, E = 2.7e-82 *->YellkklGkGaFGkVylardkk..tgrlvAiKvik.....erilrEi + k+G+G++G Vy+ar k++++ +++A+K+i +++ + +++rEi mKIAA1028 66 EYEGCKVGRGTYGHVYKARRKDgkDEKEYALKQIEgtgisMSACREI 112 kiLkk.dHPNIVkLydvfed...dklylVmEyceGdlGdLfdllkkrgrr ++L++ +HPN++ L vf ++++ k++l ++y+e+ dL +++k ++ mKIAA1028 113 ALLRElKHPNVIALQKVFLShsdRKVWLLFDYAEH---DLWHIIKFHRAS 159 glr...kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds... + ++++ +l+ ++++++++Qil+++ YLH ++++HRDLKP+NiL+ +++ mKIAA1028 160 KANkkpMQLPRsMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGegp 209 ...hvKlaDFGlArql..........ttfvGTpeYmAPEvl....gYgkp ++++vK+aD G+Ar+++++ ++ + + +v+T +Y+APE+l + ++Y+k mKIAA1028 210 ergRVKIADMGFARLFnsplkpladlDPVVVTFWYRAPELLlgarHYTK- 258 avDiWSlGcilyElltGkpPFp...............qldlifkkig... a+DiW++Gci++Ellt +p F+ ++++ +++++ +++qld+if ++g + mKIAA1028 259 AIDIWAIGCIFAELLTSEPIFHcrqediktsnpfhhdQLDRIFSVMGfpa 308 .........................................SpeakdLik ++++++ ++ +++++ ++ +++++ +++ ++ ++++ ++++ + L++ mKIAA1028 309 dkdwedirkmpeyptlqkdfrrttyansslikymekhkvkpDSKVFLLLQ 358 klLvkdPekRlta.eaLedeldikaHPff<-* klL++dP+kR+t ++aL+ +P+f mKIAA1028 359 KLLTMDPTKRITSeQALQ-------DPYF 380 //